View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12472_low_6 (Length: 229)
Name: NF12472_low_6
Description: NF12472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12472_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 23639627 - 23639428
Alignment:
| Q |
19 |
aagagatggtctgaaggagaatttcaaattgtactttcaaagttcagtcctatttggtatgcttttggattgatcagtccaggccttcaaatgtcctatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23639627 |
aagagatggtctgaaggagaatttcaaattgtactttcaaagttcagtcctatttggtatgcttttggactgatcagtccaggccttcaaatgtcctatt |
23639528 |
T |
|
| Q |
119 |
gttactataatctatgggccctaaactcttttccaactctgtattattccatcatcccttcactatatctcctcaaaggcattcccttgttcccacaggt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23639527 |
gttactataatctatgggccctaaactcttttccaactctgtattattccatcatcccttcactatatctcctcaaaggcattcccttgttcccacaggt |
23639428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 23626533 - 23626334
Alignment:
| Q |
19 |
aagagatggtctgaaggagaatttcaaattgtactttcaaagttcagtcctatttggtatgcttttggattgatcagtccaggccttcaaatgtcctatt |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| |||| |
|
|
| T |
23626533 |
aagagatggtctgaaggacaatttcaaattgtactttcaaagttcagtcctatttggtatgcttctggattgatcaatccaggtcttcaaatgtcttatt |
23626434 |
T |
|
| Q |
119 |
gttactataatctatgggccctaaactcttttccaactctgtattattccatcatcccttcactatatctcctcaaaggcattcccttgttcccacaggt |
218 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23626433 |
gttactataatctatgggcgttaaactctattccaactctctattattccatcatcccttcactttatctactcaaaggcattcccttgttcccacaggt |
23626334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University