View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12472_low_7 (Length: 213)

Name: NF12472_low_7
Description: NF12472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12472_low_7
NF12472_low_7
[»] chr1 (7 HSPs)
chr1 (50-213)||(8139162-8139325)
chr1 (70-205)||(7502967-7503107)
chr1 (50-152)||(7499600-7499701)
chr1 (130-207)||(7499658-7499735)
chr1 (2-32)||(7499560-7499590)
chr1 (71-112)||(7503119-7503160)
chr1 (1-29)||(8139337-8139365)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 8139325 - 8139162
Alignment:
Q  50 tcaacagatgcgcttcaaaaacacagattcatcattcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttt 149  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8139325 tcaacagatgcgcttcaaaaacacagattcatcattcatagaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttt 8139226  T
Q  150 tacataaatgattaagatttatacttaatgatcaagaaacataaaaaactgagacatccatcat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8139225 tacataaatgattaagatttatacttaatgatcaagaaacataaaaaactgagacatccatcat 8139162  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 7502967 - 7503107
Alignment:
Q  70 acacagattcatcattcatggaaatgatcat--gattgcagaaataaatgatcaagatttttaaataaatgagaa---agatttttacataaatgattaa 164  Q
    ||||||||||||||||||| ||| |||||||  |||||||||||||||||||||| ||||||| ||||||||  |   | ||||||||||||||||| |     
T  7502967 acacagattcatcattcatagaagtgatcatatgattgcagaaataaatgatcaatatttttacataaatgattaatgatatttttacataaatgatcag 7503066  T
Q  165 gatttatacttaatgatcaagaaacataaaaaactgagaca 205  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  7503067 gatttttacttaatgatcaagaaacataaaaaactgggaca 7503107  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 7499600 - 7499701
Alignment:
Q  50 tcaacagatgcgcttcaaaaacacagattcatcattcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttt 149  Q
    |||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| ||||||||  ||||||||    
T  7499600 tcaacagatgagcttcaaaa-cacagattcatcattcatagaagtgatcatgattgcagaaataaatgataaagatttttagataaatgattaagatttt 7499698  T
Q  150 tac 152  Q
    |||    
T  7499699 tac 7499701  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 7499658 - 7499735
Alignment:
Q  130 aaataaatgagaaagatttttacataaatgattaagatttatacttaatgatcaagaaacataaaaaactgagacatc 207  Q
    |||||||||| ||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||    
T  7499658 aaataaatgataaagatttttagataaatgattaagatttttacttcatgatctagaaacataaaaaactgagacatc 7499735  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 7499560 - 7499590
Alignment:
Q  2 ttcaagcatgcattcagtaacaaagactcaa 32  Q
    |||||||||||||||||||||||||||||||    
T  7499560 ttcaagcatgcattcagtaacaaagactcaa 7499590  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 7503119 - 7503160
Alignment:
Q  71 cacagattcatcattcatggaaatgatcatgattgcagaaat 112  Q
    |||| ||||||||||||| ||| |||||||||||||||||||    
T  7503119 cacaaattcatcattcatagaagtgatcatgattgcagaaat 7503160  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8139365 - 8139337
Alignment:
Q  1 attcaagcatgcattcagtaacaaagact 29  Q
    |||||||||||||||||||||||||||||    
T  8139365 attcaagcatgcattcagtaacaaagact 8139337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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