View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12473_low_1 (Length: 443)
Name: NF12473_low_1
Description: NF12473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12473_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 26 - 231
Target Start/End: Complemental strand, 31889751 - 31889546
Alignment:
| Q |
26 |
tggaaggtttattattttaactagtgactaattacagacgaatgaaagacaagcggacaataagatgtgccgctaagccattttggatggtaaaattatt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31889751 |
tggaaggtttattattttaactagtgactaattacacacgaatgaaagacaagcggacaataagatgtgccgttaagccattttggatggtaaaattatt |
31889652 |
T |
|
| Q |
126 |
tctcgaaaacacaacgtttgtggtcctatgagacatgacattattatgcatcatcctttgaactttgaactctttctagaatgtgagtaaatgctaagaa |
225 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
31889651 |
cctcaaaaacataacgtttgtggtcctatgagacatgacattattatgcatgatcctttgaactttgaactctttgtagaatgtgagcaaatgctaagaa |
31889552 |
T |
|
| Q |
226 |
gccgat |
231 |
Q |
| |
|
|||||| |
|
|
| T |
31889551 |
gccgat |
31889546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 312 - 426
Target Start/End: Complemental strand, 31889462 - 31889348
Alignment:
| Q |
312 |
ttgtgtgtaagatattccaatattagggcatactttatatcaattggctcattgagccaatctttgttaatatcaaagtcccttttacctctaaaagtaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31889462 |
ttgtgtgtaagatattccaatattagggcatactttatatcaattggctcattgagccaatctttgttaatatcgaagtcccttttacctctaaaagtaa |
31889363 |
T |
|
| Q |
412 |
atcaaagcccctttt |
426 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
31889362 |
atcaaagcccctttt |
31889348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 45003120 - 45003019
Alignment:
| Q |
75 |
caagcggacaataagatgtgccgctaagccattttggatggtaaaattatttctcgaaaacacaacgtttgtggtcctatgagacatgacattattatgc |
174 |
Q |
| |
|
||||||||||||||| || ||||||| || |||||||||| ||||| | | ||| ||||||||| || |||||||||||||||| ||||| ||||| |
|
|
| T |
45003120 |
caagcggacaataagctgcgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacattcatggtcctatgagacataacattgctatgc |
45003021 |
T |
|
| Q |
175 |
at |
176 |
Q |
| |
|
|| |
|
|
| T |
45003020 |
at |
45003019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 38815178 - 38815292
Alignment:
| Q |
75 |
caagcggacaataagatgtgccgctaagccattttggatggtaaaattatttctcgaaaacacaacgtttgtggtcctatgagacatgacattattatgc |
174 |
Q |
| |
|
||||||| ||| ||| || ||||||||||| |||||||||| |||| | | |||| ||||||||| || ||| |||| ||||||||||||| ||||| |
|
|
| T |
38815178 |
caagcgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgc |
38815277 |
T |
|
| Q |
175 |
atcatcctttgaact |
189 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
38815278 |
atgaccctttgaact |
38815292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 13413231 - 13413349
Alignment:
| Q |
71 |
aagacaagcggacaataagatgtgccgctaagccattttggatggtaaaattatttctcgaaaacacaacgtttgtggtcctatgagacatgacattatt |
170 |
Q |
| |
|
||||||||||||||| ||| || |||| || ||| |||||||||| |||| | ||||| ||||||||| || ||| |||| ||||||||||||| || |
|
|
| T |
13413231 |
aagacaagcggacaacaagctgagccgttaggcctttttggatggcaaaaccaattctcataaacacaacattcatggacctaggagacatgacattgtt |
13413330 |
T |
|
| Q |
171 |
atgcatcatcctttgaact |
189 |
Q |
| |
|
|||||| | | |||||||| |
|
|
| T |
13413331 |
atgcatgaccttttgaact |
13413349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 2898605 - 2898700
Alignment:
| Q |
94 |
gccgctaagccattttggatggtaaaattatttctcgaaaacacaacgtttgtggtcctatgagacatgacattattatgcatcatcctttgaact |
189 |
Q |
| |
|
||||||||||| |||||||||| ||||| | | ||| ||||||||| || || || |||||||||||| ||| |||||||| ||| |||||||| |
|
|
| T |
2898605 |
gccgctaagcctttttggatggcaaaatcaatcctcttaaacacaacattcatgatcgtatgagacatgatattgttatgcatgatcttttgaact |
2898700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 38978998 - 38978908
Alignment:
| Q |
99 |
taagccattttggatggtaaaattatttctcgaaaacacaacgtttgtggtcctatgagacatgacattattatgcatcatcctttgaact |
189 |
Q |
| |
|
|||||| |||||||||| |||| || || ||| ||||||||| || | |||||||||||||||||| |||||||||| | |||||||| |
|
|
| T |
38978998 |
taagcctttttggatggcaaaactaattttcgtaaacacaacattgataaacctatgagacatgacattgttatgcatcaccttttgaact |
38978908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 38145997 - 38146054
Alignment:
| Q |
132 |
aaacacaacgtttgtggtcctatgagacatgacattattatgcatcatcctttgaact |
189 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||| |||||||| | |||||||||| |
|
|
| T |
38145997 |
aaacacaacgttcatggacctaggagacatgacattgttatgcatgaccctttgaact |
38146054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 44198651 - 44198752
Alignment:
| Q |
75 |
caagcggacaataagatgtgccgctaagccattttggatggtaaaattatttctcgaaaacacaacgtttgtggtcctatgagacatgacattattatgc |
174 |
Q |
| |
|
||||||||||| ||| |||| |||| | || |||||||||| ||||| | || ||| ||||||||| || ||| |||| ||||||||||||| ||||| |
|
|
| T |
44198651 |
caagcggacaacaagctgtgtcgctcaacctttttggatggcaaaatcaattatcgcaaacacaacattcatggacctaggagacatgacattgctatgc |
44198750 |
T |
|
| Q |
175 |
at |
176 |
Q |
| |
|
|| |
|
|
| T |
44198751 |
at |
44198752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 56462279 - 56462215
Alignment:
| Q |
125 |
ttctcgaaaacacaacgtttgtggtcctatgagacatgacattattatgcatcatcctttgaact |
189 |
Q |
| |
|
|||||| ||||||||| ||| ||| | || ||||||||||||| | |||||| |||||||||||| |
|
|
| T |
56462279 |
ttctcgtaaacacaacatttatggacttaggagacatgacattgtcatgcatgatcctttgaact |
56462215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University