View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12473_low_2 (Length: 405)

Name: NF12473_low_2
Description: NF12473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12473_low_2
NF12473_low_2
[»] chr3 (23 HSPs)
chr3 (224-402)||(31252887-31253065)
chr3 (224-402)||(13002521-13002699)
chr3 (234-400)||(31093323-31093489)
chr3 (109-227)||(13002750-13002868)
chr3 (109-227)||(31252718-31252836)
chr3 (224-395)||(27206907-27207077)
chr3 (109-212)||(31093565-31093668)
chr3 (224-399)||(16163579-16163752)
chr3 (123-202)||(25658831-25658910)
chr3 (123-202)||(25665236-25665315)
chr3 (123-202)||(25671641-25671720)
chr3 (123-202)||(25678046-25678125)
chr3 (123-202)||(25684722-25684801)
chr3 (139-202)||(27206768-27206831)
chr3 (116-202)||(16163417-16163503)
chr3 (123-192)||(27229419-27229488)
chr3 (18-53)||(13002924-13002959)
chr3 (18-53)||(31252627-31252662)
chr3 (276-334)||(25659041-25659099)
chr3 (276-334)||(25665446-25665504)
chr3 (276-334)||(25671851-25671909)
chr3 (276-334)||(25678256-25678314)
chr3 (276-334)||(25684932-25684990)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 224 - 402
Target Start/End: Original strand, 31252887 - 31253065
Alignment:
Q  224 tggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagata 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31252887 tggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagata 31252986  T
Q  324 gcttagaattgatgatgtaaatattaagaaagactttctttgatgaattccaatcatgattacactttatatctctgct 402  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31252987 gcttagaattgatgatgtaaatattaagaaagactttctttcatgaattccaatcatgattacactttatatctctgct 31253065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 224 - 402
Target Start/End: Complemental strand, 13002699 - 13002521
Alignment:
Q  224 tggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagata 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13002699 tggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagata 13002600  T
Q  324 gcttagaattgatgatgtaaatattaagaaagactttctttgatgaattccaatcatgattacactttatatctctgct 402  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  13002599 gcttagaattgatgatgtaaatattaagaaagactttctttaatgaattacaatcatgattacactttatatctctgct 13002521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 234 - 400
Target Start/End: Complemental strand, 31093489 - 31093323
Alignment:
Q  234 tttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaatt 333  Q
    ||||||||||||||||||||||| ||||||||| | ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31093489 tttaccgaagccgcttataagcatatagctaaatgtttagtggaaggctcttttgcatatccttctctaaaacctgctcctttcaagatagcttagaatc 31093390  T
Q  334 gatgatgtaaatattaagaaagactttctttgatgaattccaatcatgattacactttatatctctg 400  Q
    ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  31093389 gatgatgtaaacattaagaacgactttctttgatgaattccaagcatgattacactttatatctctg 31093323  T

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Target: chr3; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 13002868 - 13002750
Alignment:
Q  109 atcccattcactaatttatgtacattaatgatgcaggttttatttttgataaagttgagattttgaaagcatgttgtggaggaagtggaccatatcatca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  13002868 atcccattcactaatttatgtacattaatgatgcaggttttatttctgataaggtcgagattttgaaagcatgttgtggaggaagtggaccatatcatca 13002769  T
Q  209 tgatgagtattggtgtgga 227  Q
    |||||||||||||||||||    
T  13002768 tgatgagtattggtgtgga 13002750  T

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Target: chr3; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 31252718 - 31252836
Alignment:
Q  109 atcccattcactaatttatgtacattaatgatgcaggttttatttttgataaagttgagattttgaaagcatgttgtggaggaagtggaccatatcatca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  31252718 atcccattcactaatttatgtacattaatgatgcaggttttatttctgataaggtcgagattttgaaagcatgttgtggaggaagtggaccatatcatca 31252817  T
Q  209 tgatgagtattggtgtgga 227  Q
    |||||||||||||||||||    
T  31252818 tgatgagtattggtgtgga 31252836  T

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Target: chr3; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 224 - 395
Target Start/End: Original strand, 27206907 - 27207077
Alignment:
Q  224 tggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagata 323  Q
    |||||| || ||||| ||||| ||| |||| |||||| ||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||||||||||    
T  27206907 tggaccgcactttactgaagcagctcataaacaaataactaaaggtttaatcgaaggccattttgcaaatccttctctaaaacccgctcctttcaagata 27207006  T
Q  324 gcttagaattgatgatgtaaatattaagaaagactttctttgatgaattccaatcatgattacactttatat 395  Q
    | ||||||||||||||| ||| |||||||||||||||||||||||| |||||| | |||||| |||||||||    
T  27207007 gtttagaattgatgatgcaaacattaagaaagactttctttgatgatttccaaac-tgattagactttatat 27207077  T

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Target: chr3; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 31093668 - 31093565
Alignment:
Q  109 atcccattcactaatttatgtacattaatgatgcaggttttatttttgataaagttgagattttgaaagcatgttgtggaggaagtggaccatatcatca 208  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  31093668 atcccatgcactaatttctgttcattaatgatgcaggttttatttctgataaagtcgaaattttgaaagcatgttgcggaggaagtggaccatatcatca 31093569  T
Q  209 tgat 212  Q
    ||||    
T  31093568 tgat 31093565  T

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Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 399
Target Start/End: Original strand, 16163579 - 16163752
Alignment:
Q  224 tggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagata 323  Q
    |||||| || || |||||||| || |||||||||||||| ||||| ||||| |||||  |||||||| |||| || |||||||||||| |||||||||||    
T  16163579 tggacctcacttaaccgaagcagcatataagcaaatagccaaaggtttaattgaaggttcttttgcaaatccatccctaaaacctgctgctttcaagata 16163678  T
Q  324 gcttagaattgatgatgtaaatattaagaaagactttctttgatgaattccaatcatgattacactttatatctct 399  Q
    |  ||||||||||||||   | || |||||||||||| || ||||||||| || |||||||  |||||||||||||    
T  16163679 gtctagaattgatgatg--cacatcaagaaagactttgttcgatgaattctaagcatgattggactttatatctct 16163752  T

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Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 25658831 - 25658910
Alignment:
Q  123 tttatgtacattaatgatgcaggttttatttttgataaagttgagattttgaaagcatgttgtggaggaagtggaccata 202  Q
    |||||||| |||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||    
T  25658831 tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata 25658910  T

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Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 25665236 - 25665315
Alignment:
Q  123 tttatgtacattaatgatgcaggttttatttttgataaagttgagattttgaaagcatgttgtggaggaagtggaccata 202  Q
    |||||||| |||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||    
T  25665236 tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata 25665315  T

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Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 25671641 - 25671720
Alignment:
Q  123 tttatgtacattaatgatgcaggttttatttttgataaagttgagattttgaaagcatgttgtggaggaagtggaccata 202  Q
    |||||||| |||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||    
T  25671641 tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata 25671720  T

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Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 25678046 - 25678125
Alignment:
Q  123 tttatgtacattaatgatgcaggttttatttttgataaagttgagattttgaaagcatgttgtggaggaagtggaccata 202  Q
    |||||||| |||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||    
T  25678046 tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata 25678125  T

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Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 25684722 - 25684801
Alignment:
Q  123 tttatgtacattaatgatgcaggttttatttttgataaagttgagattttgaaagcatgttgtggaggaagtggaccata 202  Q
    |||||||| |||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||    
T  25684722 tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata 25684801  T

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Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 27206768 - 27206831
Alignment:
Q  139 atgcaggttttatttttgataaagttgagattttgaaagcatgttgtggaggaagtggaccata 202  Q
    |||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||    
T  27206768 atgcaggttttactttggataacgtcgagattttgaaagcatgttgtggaggaagtggaccata 27206831  T

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Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 16163417 - 16163503
Alignment:
Q  116 tcactaatttatgtacattaatgatgcaggttttatttttgataaagttgagattttgaaagcatgttgtggaggaagtggaccata 202  Q
    |||||| ||||||| ||||||||||| ||| |||| || |||||| || ||| |||||||||||||||||||||||| |||||||||    
T  16163417 tcactagtttatgtgcattaatgatgtaggctttacttctgataaggtcgaggttttgaaagcatgttgtggaggaattggaccata 16163503  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 27229419 - 27229488
Alignment:
Q  123 tttatgtacattaatgatgcaggttttatttttgataaagttgagattttgaaagcatgttgtggaggaa 192  Q
    ||||||||||||||| ||||||| |||| || |||||| ||  ||||| || ||||||||||||||||||    
T  27229419 tttatgtacattaatcatgcaggctttacttctgataaggtcaagattatgcaagcatgttgtggaggaa 27229488  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 13002959 - 13002924
Alignment:
Q  18 tatatcaaacaccacaacagtatggtgtgtggagca 53  Q
    ||||||||||||||||||| ||||||||||||||||    
T  13002959 tatatcaaacaccacaacaatatggtgtgtggagca 13002924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 31252627 - 31252662
Alignment:
Q  18 tatatcaaacaccacaacagtatggtgtgtggagca 53  Q
    ||||||||||||| ||||||||||||||||||||||    
T  31252627 tatatcaaacacctcaacagtatggtgtgtggagca 31252662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 25659041 - 25659099
Alignment:
Q  276 gaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg 334  Q
    ||||||||||||||| ||||||| || ||| || ||| |||||| ||||||||||||||    
T  25659041 gaaggcccttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg 25659099  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 25665446 - 25665504
Alignment:
Q  276 gaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg 334  Q
    ||||||||||||||| ||||||| || ||| || ||| |||||| ||||||||||||||    
T  25665446 gaaggcccttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg 25665504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 25671851 - 25671909
Alignment:
Q  276 gaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg 334  Q
    ||||||||||||||| ||||||| || ||| || ||| |||||| ||||||||||||||    
T  25671851 gaaggcccttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg 25671909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 25678256 - 25678314
Alignment:
Q  276 gaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg 334  Q
    ||||||||||||||| ||||||| || ||| || ||| |||||| ||||||||||||||    
T  25678256 gaaggcccttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg 25678314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 25684932 - 25684990
Alignment:
Q  276 gaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg 334  Q
    ||||||||||||||| ||||||| || ||| || ||| |||||| ||||||||||||||    
T  25684932 gaaggcccttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg 25684990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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