View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12474_high_1 (Length: 822)
Name: NF12474_high_1
Description: NF12474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12474_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 667; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 20 - 775
Target Start/End: Original strand, 43695777 - 43696531
Alignment:
| Q |
20 |
atcagaatatgtttcctccatttgtcctacactacggaaatccgtaagttcttcaattgagggtgagaacaacactgcatcagtaattattgacaaatgg |
119 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695777 |
atcagaatatgtttcctccatttgtcctacactactgaaatccataagttcttcaattgagggtgagaacaacactgcatcagtaattattgacaaatgg |
43695876 |
T |
|
| Q |
120 |
ttgctgatgctagatcaggctatataagnnnnnnnnnnnnnnncccagggagatttgccactgagtcttgaggcaagcaagcttgacctgagaaaaggag |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43695877 |
ttgctgatgctagatcaggctatataagtttttttttctttttcccagggagatttgccactgagtcttgaggcaagcaagcttgacctgagaaaaggag |
43695976 |
T |
|
| Q |
220 |
aaggggaaagaaatgggaaaaagtaggtaaatgaatcttaacctacaaattttaaaatgctttgcaaaggggtagttcaatagtaatgttttcacactat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
43695977 |
aaggggaaagaaatgggaaaaagtaggtaaatgaatcttaacctacaaattttaaaatgcgttgcaaaggggtagttcaatagtattgttttcacactat |
43696076 |
T |
|
| Q |
320 |
tttttgaaaataaatccttaaagacatcgagaaccataaatatttcataccaacatgcatatttggctataggtttatggtttcacacaaatcctagttc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43696077 |
tttttgaaaataaatccttaaagacatcgagaaccataaatatttcataccaacatgcatatttggctataggtttatggtttcacacaaatcctagttc |
43696176 |
T |
|
| Q |
420 |
agcatccagatctatcacctcgaagtcttctgcgtctaacaagtctcttgcagcattaagatttatctctacagttgccatctttgacttaagcctctcc |
519 |
Q |
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| T |
43696177 |
agcatccagatctatcacctcgaagtcttctgcgtctaacaagtctcttgcagcattaagatttatctctacagttgccatctttgacttaagcctctcc |
43696276 |
T |
|
| Q |
520 |
atttccaactctagagctaccacattatccttttaacttttctacctcattcaatttctccaaataacttttcattcctaaggctgattgaacatgaagc |
619 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43696277 |
atttccaactctagagctaccacattatcc-tttagcttttctacctcattcaatttctccaaataacatttcattcctaaggctgattgaacatgaagc |
43696375 |
T |
|
| Q |
620 |
tctagccatatcaaataaaaaccaaatggcccaagttcctcccagaaaatttgaagatccttacaagctaaatcattcaaatatttcaccttcctagtct |
719 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43696376 |
cctagccatatcaaataaaaaccaaatggcccaagttcctcccagaaaatttgaagatccttacaagctaaatcattcatatatttcaccttcctagtct |
43696475 |
T |
|
| Q |
720 |
taaggaaataaagaactctgcccaaagcgttgaacgcccattccctaaacttgcta |
775 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43696476 |
taaggaaataaagaactctgcccaaagggttgaacgcccattccctaaacttgcta |
43696531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 370 - 773
Target Start/End: Original strand, 43690947 - 43691356
Alignment:
| Q |
370 |
caacatgcatatttggctataggtttatggtttcacacaaatcctagttcagcatccagatctatcacctcgaagtcttctgcg-tcta-----acaagt |
463 |
Q |
| |
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||||||||||||| | |||||||||||||||| ||| ||||||||||||||||||| ||||||| | |||| || ||||| || | ||| || |
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| T |
43690947 |
caacatgcatattaagatataggtttatggtttaaca--aatcctagttcagcatccaaatctatctcttcgagatcctctgctatcaacatcaacacgt |
43691044 |
T |
|
| Q |
464 |
ctcttgcagcattaagatttatctctacagttgccatctttgacttaagcctctccatttccaactctagagctaccacattatccttttaacttttcta |
563 |
Q |
| |
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|| ||||||||| |||||| | | |||||| |||| ||||| | | ||||||||| |||||| ||| |||||||||||||||||||||| |||||||| |
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| T |
43691045 |
cttttgcagcataaagattcacatttacagtcgccaactttgccatcagcctctccttttccatctcaagagctaccacattatccttttg-cttttcta |
43691143 |
T |
|
| Q |
564 |
cctcattcaatttctccaaataacttttcattcctaaggctgattgaacatgaagctctagccatatcaaataaaaaccaaatggcccaagttcctccca |
663 |
Q |
| |
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|||| |||| |||||||| | ||||||||||||| | |||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||||||| |
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| T |
43691144 |
cctccttcattttctccagaaaacttttcattcccagggctgattgaacatgatactctagccaagacaaatcaaaaccaaatggctgaagttcctccca |
43691243 |
T |
|
| Q |
664 |
gaaaatttgaagatcc---ttacaagctaaatcattcaaatatttcaccttcctagtcttaaggaaataaagaactctgcccaaagcgttgaacgcccat |
760 |
Q |
| |
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||||||||||||||| |||||| ||| ||||||| || |||| | || ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43691244 |
aaaaatttgaagatccatactacaagataagtcattcatatctttcccttttctagtcttaaggaaataaagaactctgcccaaagcagtgaacgcccat |
43691343 |
T |
|
| Q |
761 |
tccctaaacttgc |
773 |
Q |
| |
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||||||||||||| |
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| T |
43691344 |
tccctaaacttgc |
43691356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 574 - 762
Target Start/End: Original strand, 43709433 - 43709621
Alignment:
| Q |
574 |
tttctccaaataacttttcattcctaaggctgattgaacatgaagctctagccatatcaaataaaaaccaaatggcccaagttcctcccagaaaatttga |
673 |
Q |
| |
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|||||||| ||||||||||||| ||| || ||||||||||| |||||||||| || || ||| |||||| | ||||||||||||| ||||||||| |
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| T |
43709433 |
tttctccacgtaacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttga |
43709532 |
T |
|
| Q |
674 |
agatccttacaagctaaatcattcaaatatttcaccttcctagtcttaaggaaataaagaactctgcccaaagcgttgaacgcccattc |
762 |
Q |
| |
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|||||||| |||||| |||||||| | |||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
43709533 |
agatccttgcaagcttgatcattcatgtctttcgcctttctagtcttaaggaaataaagaactctgcccaaagcggtgaaagcccattc |
43709621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 651 - 744
Target Start/End: Original strand, 43695617 - 43695710
Alignment:
| Q |
651 |
caagttcctcccagaaaatttgaagatccttacaagctaaatcattcaaatatttcaccttcctagtcttaaggaaataaagaactctgcccaa |
744 |
Q |
| |
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||||||||||||| |||| |||||||||||||||||| ||||||| | | |||| || ||||||||||||||||||| |||||| ||||| |
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| T |
43695617 |
caagttcctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcacttttctagtcttaaggaaataaataactctccccaa |
43695710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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