View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12474_low_2 (Length: 307)
Name: NF12474_low_2
Description: NF12474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12474_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 14705239 - 14705509
Alignment:
| Q |
19 |
ataacgtgaactcggtgttgaacgtgatagccaacatgcaacaacaaaaccaccgtgtgctatttgatgtacccaactcaagaattggtattgctcgtga |
118 |
Q |
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| T |
14705239 |
ataacgtgaactcggtgttgaacgtgatagccaacatgcaacaacaaaaccaccgtgtgctatttgatgtacccaactcaagaattggtattgctcgtga |
14705338 |
T |
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| Q |
119 |
gctttgcacctaataagtggttcctggttaagatcaattttcttaggtacaataataatcttgtcgaattgggattatgagttaattatttgggtagttg |
218 |
Q |
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| T |
14705339 |
gctttgcacctaataagtggttcttggttaagatcaattttcttaggtacaataataatcttgtcgaattgggattatgagttaattatttgggtagttg |
14705438 |
T |
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| Q |
219 |
gtattttatttttattcatgtcatttggggtttggtattgctaagagtttattgctaactatgtagtaaga |
289 |
Q |
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| T |
14705439 |
gtattttatttttattcatgtcatttgggttttggtattgctaagagtttattgctaactatgtagtaaga |
14705509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 4035646 - 4035531
Alignment:
| Q |
19 |
ataacgtgaactcggtgttgaacgtgatagccaacatgcaacaacaaaaccaccgtgtgctatttgatgtacccaactcaagaattggtattgctcgtga |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| || ||||| || ||||| |||||||||| |
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| T |
4035646 |
ataatgtgaactcggtgttgaacgtgatagccaacatgcagcaacaaaaccaccgtgtgctctatgatgtccctaactctagggttggtgttgctcgtga |
4035547 |
T |
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| Q |
119 |
gctttgcacctaataa |
134 |
Q |
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| T |
4035546 |
gctatgtacttaataa |
4035531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 13952057 - 13952172
Alignment:
| Q |
19 |
ataacgtgaactcggtgttgaacgtgatagccaacatgcaacaacaaaaccaccgtgtgctatttgatgtacccaactcaagaattggtattgctcgtga |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||| || ||||| || ||||| |||||||||| |
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| T |
13952057 |
ataatgtgaactcggtgttgaacgtgatagccaacatgcagcaacaaaaccaccgtgttctctatgatgtccctaactctagggttggtgttgctcgtga |
13952156 |
T |
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| Q |
119 |
gctttgcacctaataa |
134 |
Q |
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||| || || |||||| |
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| T |
13952157 |
gctatgtacttaataa |
13952172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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