View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12475_low_2 (Length: 401)
Name: NF12475_low_2
Description: NF12475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12475_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 12397644 - 12397445
Alignment:
| Q |
15 |
tgctcaggatatcccagttgttgtgtaaagggtttttgcatttgtaaaccttgttctctttctctgaatgatgtatcgatcattcaacccaattctcaat |
114 |
Q |
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| T |
12397644 |
tgctcaggatatcccagttgttgtgtaaagggtttttgcatttgtaaaccttgttctccttctttgaatgatgtatcgatcattcaacccaattctcaat |
12397545 |
T |
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| Q |
115 |
taaactagaatggtccttatctattttataatattggtcctgtagtttataataattcatgcaataaaatgactttgacctgattggaattagcttaatt |
214 |
Q |
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| T |
12397544 |
taaactagaatggtccttatctattttataatattggtcctatagtttataataattcatgcaataaaatcactttgacctgattggaattagcttaatt |
12397445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 220 - 347
Target Start/End: Complemental strand, 12397277 - 12397150
Alignment:
| Q |
220 |
tctgttcgagatcattttactaaactcataaatgcatcaaactttatggttggtttgatgccacttttggtgtagtgtggcaccttttcttctattcttt |
319 |
Q |
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| T |
12397277 |
tctgttcgagatcattttactaaactcataaatgcatcaaactttatggttggtttgatgccacttttggtgtagtgtggcaccttttcttctattcttt |
12397178 |
T |
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| Q |
320 |
ttctgtgtcaaaatgttatgtcacctaa |
347 |
Q |
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| T |
12397177 |
ttctgtgtcaaaatgttatgtcacctaa |
12397150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 12380111 - 12379976
Alignment:
| Q |
20 |
aggatatcccagttgttgtgtaaagggtttttgcatttgtaaaccttgttctctttctctgaatgatgtatcgatcattcaacccaattctcaattaaac |
119 |
Q |
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| T |
12380111 |
aggatatccctattgttgtgtaaagggtttttgcatttgtaaaacttgtcctccttctttgaatgatttatcgatcattcaacccaattctcatttaaac |
12380012 |
T |
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| Q |
120 |
tagaatggtccttatctattttataatattggtcct |
155 |
Q |
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| T |
12380011 |
tagaatggtccttatctattttataatattggtcct |
12379976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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