View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12475_low_5 (Length: 201)

Name: NF12475_low_5
Description: NF12475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12475_low_5
NF12475_low_5
[»] scaffold0484 (1 HSPs)
scaffold0484 (20-141)||(8174-8295)
[»] chr2 (24 HSPs)
chr2 (20-141)||(42782596-42782717)
chr2 (19-140)||(4289027-4289148)
chr2 (20-141)||(10874397-10874518)
chr2 (20-141)||(28609875-28609996)
chr2 (20-133)||(19488199-19488311)
chr2 (29-139)||(9916707-9916817)
chr2 (20-140)||(19484616-19484737)
chr2 (20-120)||(18090631-18090731)
chr2 (19-140)||(9542629-9542750)
chr2 (20-140)||(17838396-17838516)
chr2 (20-91)||(32675792-32675863)
chr2 (20-77)||(6931828-6931885)
chr2 (20-91)||(1501317-1501387)
chr2 (99-141)||(7364781-7364823)
chr2 (99-139)||(18137902-18137942)
chr2 (99-142)||(33908193-33908236)
chr2 (100-142)||(6342726-6342768)
chr2 (99-141)||(26828461-26828503)
chr2 (99-140)||(5253296-5253337)
chr2 (106-142)||(1691424-1691460)
chr2 (99-139)||(10820973-10821013)
chr2 (99-139)||(11707575-11707615)
chr2 (99-143)||(30922094-30922138)
chr2 (99-139)||(45003662-45003702)
[»] chr5 (33 HSPs)
chr5 (20-140)||(36884780-36884900)
chr5 (19-140)||(34719379-34719500)
chr5 (19-139)||(25695539-25695659)
chr5 (20-139)||(3086433-3086553)
chr5 (19-139)||(41693063-41693183)
chr5 (20-141)||(752054-752175)
chr5 (20-139)||(34725259-34725380)
chr5 (20-117)||(17636708-17636805)
chr5 (20-140)||(43136273-43136394)
chr5 (20-91)||(42975438-42975509)
chr5 (19-141)||(30181332-30181457)
chr5 (24-91)||(2182781-2182848)
chr5 (29-91)||(12588343-12588405)
chr5 (99-142)||(36366122-36366165)
chr5 (99-141)||(32977100-32977142)
chr5 (99-140)||(2366839-2366880)
chr5 (99-140)||(7863528-7863569)
chr5 (99-140)||(22602634-22602675)
chr5 (99-139)||(42819330-42819370)
chr5 (20-91)||(33704804-33704875)
chr5 (99-142)||(34373666-34373709)
chr5 (99-141)||(4883072-4883114)
chr5 (102-140)||(5620643-5620681)
chr5 (102-140)||(9702713-9702751)
chr5 (99-141)||(13596920-13596962)
chr5 (99-133)||(14387902-14387936)
chr5 (99-141)||(20350826-20350868)
chr5 (105-142)||(1685045-1685082)
chr5 (103-140)||(9809820-9809857)
chr5 (99-140)||(17997461-17997502)
chr5 (103-139)||(12702061-12702097)
chr5 (99-139)||(19395655-19395695)
chr5 (103-143)||(33931119-33931159)
[»] scaffold0057 (1 HSPs)
scaffold0057 (19-140)||(17400-17521)
[»] chr8 (35 HSPs)
chr8 (19-140)||(18375557-18375678)
chr8 (24-140)||(36778406-36778522)
chr8 (20-141)||(25361437-25361558)
chr8 (20-139)||(40586443-40586562)
chr8 (20-119)||(42244356-42244455)
chr8 (20-122)||(9474045-9474147)
chr8 (20-141)||(24055762-24055884)
chr8 (20-141)||(8762935-8763056)
chr8 (20-140)||(41158566-41158686)
chr8 (20-139)||(1945110-1945229)
chr8 (20-140)||(7391240-7391364)
chr8 (20-139)||(25345916-25346037)
chr8 (20-141)||(8160418-8160539)
chr8 (20-141)||(25833996-25834117)
chr8 (20-79)||(25618560-25618619)
chr8 (20-141)||(41978781-41978902)
chr8 (20-91)||(44380761-44380832)
chr8 (20-90)||(4464405-4464474)
chr8 (20-141)||(41531768-41531889)
chr8 (20-90)||(32847118-32847188)
chr8 (99-141)||(5836241-5836283)
chr8 (99-140)||(2961008-2961049)
chr8 (99-140)||(27272687-27272728)
chr8 (102-142)||(12249909-12249949)
chr8 (102-142)||(23626053-23626093)
chr8 (99-143)||(32569573-32569617)
chr8 (102-142)||(39445258-39445298)
chr8 (99-142)||(2680233-2680276)
chr8 (100-142)||(6300486-6300528)
chr8 (99-141)||(27273879-27273921)
chr8 (100-142)||(37029917-37029959)
chr8 (103-141)||(41908015-41908053)
chr8 (100-141)||(42060660-42060701)
chr8 (99-139)||(11697111-11697151)
chr8 (99-139)||(28940714-28940754)
[»] chr7 (30 HSPs)
chr7 (19-140)||(31896813-31896934)
chr7 (20-133)||(9151341-9151454)
chr7 (19-140)||(24682277-24682398)
chr7 (20-141)||(39278160-39278281)
chr7 (20-139)||(44806500-44806619)
chr7 (20-141)||(21669230-21669351)
chr7 (19-139)||(17172815-17172935)
chr7 (20-91)||(35155537-35155608)
chr7 (20-140)||(39647981-39648101)
chr7 (24-139)||(7854965-7855082)
chr7 (20-91)||(34873742-34873813)
chr7 (21-89)||(21598003-21598071)
chr7 (24-140)||(27732952-27733069)
chr7 (20-140)||(29469140-29469260)
chr7 (19-142)||(48527406-48527532)
chr7 (29-139)||(3795643-3795753)
chr7 (21-89)||(11835010-11835078)
chr7 (20-90)||(49144084-49144154)
chr7 (24-141)||(691214-691332)
chr7 (24-79)||(33636936-33636991)
chr7 (20-90)||(4850370-4850440)
chr7 (99-140)||(12960608-12960649)
chr7 (100-141)||(17817721-17817762)
chr7 (102-141)||(9226019-9226058)
chr7 (102-140)||(38434277-38434315)
chr7 (102-144)||(42996945-42996987)
chr7 (99-140)||(27840515-27840556)
chr7 (100-141)||(47573331-47573372)
chr7 (103-139)||(15595430-15595466)
chr7 (100-140)||(19049240-19049280)
[»] chr6 (26 HSPs)
chr6 (20-140)||(9978707-9978827)
chr6 (19-144)||(24447716-24447841)
chr6 (20-142)||(35160045-35160167)
chr6 (20-140)||(15043827-15043947)
chr6 (20-143)||(4895958-4896081)
chr6 (20-89)||(4109978-4110047)
chr6 (19-139)||(1222305-1222426)
chr6 (19-140)||(18320648-18320769)
chr6 (24-85)||(9735751-9735812)
chr6 (24-142)||(33319563-33319682)
chr6 (20-142)||(6966234-6966357)
chr6 (20-77)||(14832974-14833031)
chr6 (99-143)||(33319050-33319094)
chr6 (99-142)||(18389165-18389208)
chr6 (99-139)||(4110062-4110102)
chr6 (99-141)||(5753125-5753167)
chr6 (99-141)||(11681668-11681710)
chr6 (99-141)||(22373138-22373180)
chr6 (99-133)||(22975724-22975758)
chr6 (99-133)||(23812643-23812677)
chr6 (99-140)||(1932341-1932382)
chr6 (99-140)||(2522025-2522066)
chr6 (99-140)||(2624721-2624762)
chr6 (99-144)||(4425909-4425954)
chr6 (100-140)||(13456734-13456774)
chr6 (105-141)||(18985190-18985226)
[»] scaffold0069 (1 HSPs)
scaffold0069 (19-142)||(14569-14692)
[»] chr4 (48 HSPs)
chr4 (20-139)||(3759202-3759321)
chr4 (24-130)||(24549349-24549455)
chr4 (20-141)||(17741585-17741706)
chr4 (20-144)||(39404587-39404711)
chr4 (20-143)||(9887267-9887390)
chr4 (20-142)||(20590926-20591048)
chr4 (20-142)||(51347989-51348111)
chr4 (20-140)||(30527587-30527707)
chr4 (20-140)||(16653117-16653237)
chr4 (19-139)||(39713496-39713616)
chr4 (20-139)||(8532149-8532265)
chr4 (20-141)||(29713746-29713867)
chr4 (29-141)||(35707656-35707769)
chr4 (20-140)||(8964756-8964876)
chr4 (29-139)||(574177-574288)
chr4 (20-119)||(36741820-36741919)
chr4 (18-91)||(13172869-13172942)
chr4 (20-141)||(37352023-37352144)
chr4 (20-141)||(37356922-37357043)
chr4 (19-116)||(52802855-52802952)
chr4 (20-140)||(8989123-8989243)
chr4 (20-91)||(24944180-24944251)
chr4 (20-140)||(2118112-2118233)
chr4 (29-117)||(53991300-53991388)
chr4 (20-139)||(12680630-12680754)
chr4 (20-90)||(43023949-43024019)
chr4 (20-90)||(50043259-50043329)
chr4 (20-140)||(5759264-5759384)
chr4 (21-89)||(46106345-46106413)
chr4 (19-91)||(47555475-47555546)
chr4 (99-139)||(56541767-56541807)
chr4 (99-140)||(15650485-15650526)
chr4 (99-140)||(23992319-23992360)
chr4 (99-143)||(19591082-19591126)
chr4 (99-139)||(43014591-43014631)
chr4 (99-142)||(41983529-41983572)
chr4 (99-141)||(2777223-2777265)
chr4 (100-142)||(15521071-15521113)
chr4 (99-140)||(5271601-5271642)
chr4 (99-140)||(21353965-21354006)
chr4 (99-140)||(28134707-28134748)
chr4 (102-143)||(28974014-28974055)
chr4 (24-53)||(50118154-50118183)
chr4 (99-139)||(3839095-3839135)
chr4 (99-139)||(5483035-5483075)
chr4 (99-139)||(14828803-14828843)
chr4 (99-139)||(16895951-16895991)
chr4 (105-141)||(27892642-27892678)
[»] chr1 (32 HSPs)
chr1 (19-141)||(4893889-4894011)
chr1 (20-142)||(19320418-19320540)
chr1 (29-143)||(10763519-10763633)
chr1 (19-142)||(29184475-29184598)
chr1 (29-140)||(29840689-29840800)
chr1 (18-139)||(33363492-33363613)
chr1 (20-140)||(38896736-38896857)
chr1 (20-140)||(28573082-28573202)
chr1 (20-146)||(1375904-1376030)
chr1 (20-142)||(22194465-22194587)
chr1 (20-140)||(47137780-47137901)
chr1 (20-140)||(33074231-33074351)
chr1 (18-117)||(49587036-49587135)
chr1 (29-141)||(42682522-42682635)
chr1 (20-91)||(50563394-50563465)
chr1 (20-140)||(24289200-24289321)
chr1 (19-140)||(46623376-46623497)
chr1 (20-116)||(1828360-1828456)
chr1 (20-90)||(16302064-16302134)
chr1 (20-71)||(51964532-51964583)
chr1 (20-90)||(5428237-5428306)
chr1 (99-141)||(3929746-3929788)
chr1 (99-141)||(28565428-28565470)
chr1 (102-143)||(28631815-28631856)
chr1 (99-142)||(29693389-29693432)
chr1 (99-133)||(34265882-34265916)
chr1 (99-140)||(20767557-20767598)
chr1 (99-140)||(44407295-44407336)
chr1 (105-142)||(48183173-48183210)
chr1 (99-139)||(24294870-24294910)
chr1 (99-139)||(31620600-31620640)
chr1 (100-140)||(50394966-50395006)
[»] chr3 (30 HSPs)
chr3 (20-140)||(26100777-26100898)
chr3 (26-140)||(35860930-35861044)
chr3 (24-140)||(55290396-55290512)
chr3 (20-140)||(4137399-4137522)
chr3 (20-141)||(48519654-48519775)
chr3 (20-139)||(52843107-52843226)
chr3 (29-142)||(22477836-22477950)
chr3 (20-91)||(28979656-28979727)
chr3 (20-142)||(26776431-26776556)
chr3 (20-91)||(29528800-29528871)
chr3 (29-140)||(11950990-11951101)
chr3 (22-141)||(19893178-19893296)
chr3 (20-133)||(19360741-19360854)
chr3 (21-89)||(22522191-22522259)
chr3 (24-142)||(8396691-8396810)
chr3 (20-140)||(18688596-18688716)
chr3 (20-117)||(39094473-39094570)
chr3 (20-91)||(53802285-53802355)
chr3 (99-139)||(30766507-30766547)
chr3 (20-140)||(12001426-12001545)
chr3 (100-142)||(5240990-5241032)
chr3 (99-140)||(6103432-6103473)
chr3 (99-139)||(188737-188777)
chr3 (20-72)||(40817245-40817297)
chr3 (99-142)||(19353796-19353839)
chr3 (102-140)||(21165930-21165968)
chr3 (102-144)||(22522275-22522317)
chr3 (99-141)||(50742297-50742339)
chr3 (99-139)||(39576535-39576575)
chr3 (105-141)||(41053811-41053847)
[»] scaffold0381 (1 HSPs)
scaffold0381 (20-143)||(11154-11277)
[»] scaffold0009 (2 HSPs)
scaffold0009 (20-140)||(139497-139617)
scaffold0009 (20-90)||(233146-233216)
[»] scaffold0051 (2 HSPs)
scaffold0051 (20-141)||(55481-55603)
scaffold0051 (99-139)||(61714-61754)
[»] scaffold0230 (1 HSPs)
scaffold0230 (19-140)||(26026-26147)
[»] scaffold0759 (1 HSPs)
scaffold0759 (20-91)||(3473-3544)
[»] scaffold0385 (1 HSPs)
scaffold0385 (29-117)||(4207-4295)
[»] scaffold0115 (1 HSPs)
scaffold0115 (20-91)||(14934-15005)
[»] scaffold0032 (1 HSPs)
scaffold0032 (20-71)||(2913-2964)
[»] scaffold0079 (1 HSPs)
scaffold0079 (20-59)||(8778-8817)
[»] scaffold0249 (1 HSPs)
scaffold0249 (99-141)||(24917-24959)
[»] scaffold0103 (1 HSPs)
scaffold0103 (99-141)||(13024-13066)
[»] scaffold0045 (1 HSPs)
scaffold0045 (99-140)||(12213-12254)
[»] scaffold0110 (1 HSPs)
scaffold0110 (99-139)||(48526-48566)
[»] scaffold0088 (1 HSPs)
scaffold0088 (102-141)||(52691-52730)
[»] scaffold0001 (1 HSPs)
scaffold0001 (99-138)||(12956-12995)
[»] scaffold0171 (1 HSPs)
scaffold0171 (99-140)||(29638-29679)
[»] scaffold0027 (1 HSPs)
scaffold0027 (99-140)||(143213-143254)
[»] scaffold0047 (1 HSPs)
scaffold0047 (99-139)||(25614-25654)
[»] scaffold0005 (1 HSPs)
scaffold0005 (99-139)||(10866-10906)


Alignment Details
Target: scaffold0484 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 8295 - 8174
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       || ||||||||||||||||||    
T  8295 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcgaaactaaattttaaaaaaatatgttattcaacccgtgcga 8196  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  8195 agcacgggtttgtaactagttt 8174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 42782596 - 42782717
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||| ||    
T  42782596 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcgaaactaaattttaaaaaaatacgttattcaacccgtgtga 42782695  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  42782696 agcacgggtttgtaactagttt 42782717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 4289148 - 4289027
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||    
T  4289148 ttttgattttcacattgataaaggacaacaattttccataatttataagatttctccttcgaaactaaatttttaaaaaatacgttattcaacccgtgcg 4289049  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  4289048 aagcacgggtttgtaactagtt 4289027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 10874518 - 10874397
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||       || |||||||||| |||||||    
T  10874518 tttgattttcacatttataaaggacaacaattttctgtaatttataagatttctccttcgaaactaaattttaaaaaaatatgttattcaactcgtgcga 10874419  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| || ||||| |||||||    
T  10874418 agcacgggattgtaactagttt 10874397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 28609875 - 28609996
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||||||||||        ||||||||||||||||||| |    
T  28609875 tttgattttcacatttataaaggacatcaattttctgtaatttataagatttctccttcggaactaaatttaaaaaaaatacgttattcaacccgtgcaa 28609974  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  28609975 agcacgggtttgtaactagttt 28609996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 19488199 - 19488311
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||       |||||||||||||||||||||    
T  19488199 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcaaaacaaaatttt-aaaaaatacgttattcaacccgtgcga 19488297  T
Q  120 agcacaggtttgta 133  Q
    | ||| ||||||||    
T  19488298 aacacgggtttgta 19488311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 9916817 - 9916707
Alignment:
Q  29 cacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcgaagcacaggt 128  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||       |||||||||||||| ||||||||||| |||    
T  9916817 cacatttataaaggacaacaattttccgtaatttataagatttctccttcataactaaattttaaaaaaatacgttattcaacctgtgcgaagcacgggt 9916718  T
Q  129 ttgtacctagt 139  Q
    ||||| |||||    
T  9916717 ttgtaactagt 9916707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 19484737 - 19484616
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt-nnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||        || |||||||||||||||||    
T  19484737 tttgattttcacatttataaaggacaacaattttccataatttataagatttctccttcaaaactaaattttaaaaaaaatatgttattcaacccgtgcg 19484638  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||| | ||||||    
T  19484637 aagcacgggtttgcaactagtt 19484616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 18090731 - 18090631
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| |||||||||||       |||||||||||||||||||||    
T  18090731 tttgattttcacatttataaaggacaatagttttccgtaatttataagatttctccttcggaactaaatttttgaaaaatacgttattcaacccgtgcga 18090632  T
Q  120 a 120  Q
    |    
T  18090631 a 18090631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 9542750 - 9542629
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||  | |||||||||       || |||||||||||||||||    
T  9542750 ttttaattttcacattgataaaggacaacaattttccgtaatttataagatttcttcttcagagctaaatttttaaaaaatatgttattcaacccgtgcg 9542651  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  9542650 aagcacgggtttgtaactagtt 9542629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 17838396 - 17838516
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||  |||||||||||       |||||||||||||| |||| |    
T  17838396 tttgattttcacatttataaagggtaacaattttccgtaatttataagatttctccttcataactaaattttaaaaaaatacgttattcaacctgtgcaa 17838495  T
Q  120 agcacaggtttgtacctagtt 140  Q
    ||||| ||||| || ||||||    
T  17838496 agcacgggtttataactagtt 17838516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 32675863 - 32675792
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  32675863 tttgattttcacacttatagaggacaacaattttccgtaatttataagatttctccttcaaaactaaatttt 32675792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 6931828 - 6931885
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctcctt 77  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  6931828 tttgattttcacatttataaaggacaacaattttccgtaatctataagaattctcctt 6931885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 1501387 - 1501317
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    ||||||||||||||||||||||||||| || ||||| ||||||||||||  | ||||||  |||||||||||    
T  1501387 tttgattttcacatttataaaggacaataa-tttccataatttataaaaaatttccttcataactaaatttt 1501317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 7364781 - 7364823
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    |||||||||||||||||||||||||| |||||||| |||||||    
T  7364781 tacgttattcaacccgtgcgaagcacgggtttgtaactagttt 7364823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 18137902 - 18137942
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  18137902 tacgttattgaacccgtgcgaagcacaggtttgtaactagt 18137942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 33908193 - 33908236
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    ||||||||| |||||||||||||||| |||||||| ||||||||    
T  33908193 tacgttattgaacccgtgcgaagcacgggtttgtaactagtttt 33908236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 6342768 - 6342726
Alignment:
Q  100 acgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    |||||||| |||||||||||||||| |||||||| ||||||||    
T  6342768 acgttattaaacccgtgcgaagcacgggtttgtaactagtttt 6342726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 26828461 - 26828503
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||||||| |||||||||||||||| |||||||| |||||||    
T  26828461 tacgttattgaacccgtgcgaagcacgggtttgtaactagttt 26828503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 5253296 - 5253337
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  5253296 tacgttattgaacccgtgcgaagcacgggtttgtaactagtt 5253337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 1691460 - 1691424
Alignment:
Q  106 ttcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  1691460 ttcaacccgtgcgaagcacgggtttgtaactagtttt 1691424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 10821013 - 10820973
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    |||||||||||||||||||||||||||  |||||| |||||    
T  10821013 tacgttattcaacccgtgcgaagcacaaatttgtaactagt 10820973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 11707575 - 11707615
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||| |||||||||||||||| |||||||| |||||    
T  11707575 tacgttattgaacccgtgcgaagcacgggtttgtaactagt 11707615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 30922138 - 30922094
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtttta 143  Q
    ||||| |||||||||||| ||||||| |||||||| |||||||||    
T  30922138 tacgtaattcaacccgtgtgaagcacgggtttgtaactagtttta 30922094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 45003702 - 45003662
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||| |||||||||||||||||||| |||||||| |||||    
T  45003702 tacgtaattcaacccgtgcgaagcacgggtttgtaactagt 45003662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 4e-40; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 36884900 - 36884780
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||| ||    
T  36884900 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcgaaactaaattttaaaaaaatacgttattcaacccgtgtga 36884801  T
Q  120 agcacaggtttgtacctagtt 140  Q
    ||||| |||||||| ||||||    
T  36884800 agcacgggtttgtaactagtt 36884780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 34719379 - 34719500
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||    
T  34719379 ttttgattttcacaatgataaaggacaacaattttccgtaatttataagatttctccttcgaaactaaatttttaaaaaatacgttattcaacccgtgcg 34719478  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  34719479 aagcacgggtttgtaactagtt 34719500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 25695659 - 25695539
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||    
T  25695659 ttttgattttcacattgataaataacaacaattttccgtaatttataagatttctccttcgaaactaaatttttaaaaaatacgttattcaacccgtgcg 25695560  T
Q  119 aagcacaggtttgtacctagt 139  Q
    |||||| |||||||| |||||    
T  25695559 aagcacgggtttgtaactagt 25695539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 3086553 - 3086433
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt-nnnnnnntacgttattcaacccgtgcg 118  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||        ||||||||||||||||||||    
T  3086553 tttgattttcatatttataaagaacaacaattttccgtaatttataagatttctccttcgaaactaaattttaaaaaaaatacgttattcaacccgtgcg 3086454  T
Q  119 aagcacaggtttgtacctagt 139  Q
    |||||| |||||||| |||||    
T  3086453 aagcacgggtttgtaactagt 3086433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 41693063 - 41693183
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||       ||||||||||||||||||||    
T  41693063 ttttgattttcacaatgataaaggacaacaattttccgtaatttataagatttctccttcggaactaaatttttaaaaaatacgttattcaacccgtgcg 41693162  T
Q  119 aagcacaggtttgtacctagt 139  Q
    ||||||  ||||||| |||||    
T  41693163 aagcacgagtttgtaactagt 41693183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 752175 - 752054
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||        ||||||||||||||||||| |    
T  752175 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctccttcaaaactaaatttaaaaaaaatacgttattcaacccgtgcaa 752076  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  752075 agcacgggtttgtaactagttt 752054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 34725380 - 34725259
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt--nnnnnnntacgttattcaacccgtgc 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||         || |||||| |||||||||    
T  34725380 tttgattttcacatttataaaggacaacaatttttcgtaatttataagatttctccttcggaactaaattttaaaaaagaatatgttatttaacccgtgc 34725281  T
Q  118 gaagcacaggtttgtacctagt 139  Q
    ||||||| |||||||| |||||    
T  34725280 gaagcacgggtttgtaactagt 34725259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 17636805 - 17636708
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgc 117  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||| |||||       |||||||||||||||||||    
T  17636805 tttgattttcacatttataaaggacaataattttctgtaatttataagatttctcattcgaaactatattttaaaaaaatacgttattcaacccgtgc 17636708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 43136394 - 43136273
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattt-tnnnnnnntacgttattcaacccgtgcg 118  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||| |||||||||||         |||||||||||||||||||     
T  43136394 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctcattcaaaactaaatttaaaaaaaaatacgttattcaacccgtgca 43136295  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  43136294 aagcacgggtttgtaactagtt 43136273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 42975509 - 42975438
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||||||||    
T  42975509 tttgattttcacatttataaaggacaacaattttttgtaatttataagatttctccttcaaaactaaatttt 42975438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 30181332 - 30181457
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||||| |  ||||||||       ||||||||||||||||||||    
T  30181332 ttttgattttcacattgataaaggacaataattttccgtaatttataagatttcttcttcggagttaaattttttaaaaatacgttattcaacccgtgcg 30181431  T
Q  119 aa---gcacaggtttgtacctagttt 141  Q
    ||   |||| |||||||| |||||||    
T  30181432 aattcgcacgggtttgtaactagttt 30181457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 2182781 - 2182848
Alignment:
Q  24 attttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||    
T  2182781 attttcacaattataaaggacaacaattttccgtaatttataatatttctccttcggagctaaatttt 2182848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 12588405 - 12588343
Alignment:
Q  29 cacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    ||||||||||||||||||||||||||||||||||||||||  | |||||| ||||||||||||    
T  12588405 cacatttataaaggacaacaattttccgtaatttataaaaaatttccttcaaaactaaatttt 12588343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 36366165 - 36366122
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    |||||||||||||||||||||||||| |||||||| ||||||||    
T  36366165 tacgttattcaacccgtgcgaagcacgggtttgtaactagtttt 36366122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 32977142 - 32977100
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    |||||||||||||||||||||||||| |||||||| |||||||    
T  32977142 tacgttattcaacccgtgcgaagcaccggtttgtaactagttt 32977100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 2366880 - 2366839
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  2366880 tacgttattcaacccgtgcgaaacacaggtttgtaactagtt 2366839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 7863569 - 7863528
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  7863569 tacgttattcaacccgtgcgaagcacgggtttgtaactagtt 7863528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 22602675 - 22602634
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  22602675 tacgttattcaacccgtgcgaagcacgggtttgtaactagtt 22602634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 42819370 - 42819330
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  42819370 tacgttattcaacccgtgcgaagcacgggtttgtaactagt 42819330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 33704875 - 33704804
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    ||||| ||| |||||||||||| || | |||||||  |||||||||| |||| || ||||||||||||||||    
T  33704875 tttgacttttacatttataaagaacgataattttctataatttataagatttttcattcgaaactaaatttt 33704804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 34373709 - 34373666
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    ||||||||| |||||||||||||||| |||||||| ||||||||    
T  34373709 tacgttattaaacccgtgcgaagcacgggtttgtaactagtttt 34373666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 4883072 - 4883114
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||||||| |||||||||||||||| |||||||| |||||||    
T  4883072 tacgttattgaacccgtgcgaagcacgggtttgtaactagttt 4883114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 5620681 - 5620643
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  5620681 gttattcaacccgtgcgaagcacgggtttgtaactagtt 5620643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 9702713 - 9702751
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  9702713 gttattcaacccgtgcgaagcacgggtttgtaactagtt 9702751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 13596920 - 13596962
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||| |||||||||||||||||||| |||||||| |||||||    
T  13596920 tacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 13596962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 14387936 - 14387902
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgta 133  Q
    |||||||||||||||||||||||||| ||||||||    
T  14387936 tacgttattcaacccgtgcgaagcacgggtttgta 14387902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 20350826 - 20350868
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||||||| |||||||||||||||| |||||||| |||||||    
T  20350826 tacgttattgaacccgtgcgaagcacgggtttgtaactagttt 20350868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 1685082 - 1685045
Alignment:
Q  105 attcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  1685082 attcaacccgtgcgaagcacgggtttgtaactagtttt 1685045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 9809857 - 9809820
Alignment:
Q  103 ttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  9809857 ttattcaacccgtgcgaagcacgggtttgtaactagtt 9809820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 17997461 - 17997502
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  17997461 tacgttattgaacccgtgcgaagcacgggtttgtaactagtt 17997502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 12702097 - 12702061
Alignment:
Q  103 ttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    |||||||||||||||||||||| |||||||| |||||    
T  12702097 ttattcaacccgtgcgaagcacgggtttgtaactagt 12702061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 19395655 - 19395695
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||| |||||||||||||||| |||||||| |||||    
T  19395655 tacgttattgaacccgtgcgaagcacgggtttgtaactagt 19395695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 33931119 - 33931159
Alignment:
Q  103 ttattcaacccgtgcgaagcacaggtttgtacctagtttta 143  Q
    ||||| |||||||||||||||| |||||||| |||||||||    
T  33931119 ttattgaacccgtgcgaagcacgggtttgtaactagtttta 33931159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 17521 - 17400
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||    
T  17521 ttttgattttcatattgataaaggacaacaattttccgtaatttataaaatttctccttcgaaattaaatttttaaaaaatacgttattcaacccgtgcg 17422  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  17421 aagcacgggtttgtaactagtt 17400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 2e-38; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 18375678 - 18375557
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||    
T  18375678 ttttgattttcacattgataaatgacaacaattttccgtaatttataagatttctccttcgaaactaaatttttaaaaaatacgttattcaacccgtgcg 18375579  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  18375578 aagcacgggtttgtaactagtt 18375557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 36778406 - 36778522
Alignment:
Q  24 attttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcgaagca 123  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  36778406 attttcacatttataaagaacaacaattttccgtaatttataagatttctccttcgaaactaaattttaaaaaaatacgttattcaacccgtgcgaagca 36778505  T
Q  124 caggtttgtacctagtt 140  Q
    | |||||||| ||||||    
T  36778506 cgggtttgtaactagtt 36778522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 25361437 - 25361558
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||       || |||||||| |||||| ||    
T  25361437 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctctttcgaaactaaattttaaaaaaatatgttattcatcccgtgtga 25361536  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  25361537 agcacgggtttgtaactagttt 25361558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 40586562 - 40586443
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| ||||||||||||       |||||||||||||||||||||    
T  40586562 tttgattttcacatttataaatgataacaattttccgtaatttataagatttctccttcaaaactaaattttaaaaaaatacgttattcaacccgtgcga 40586463  T
Q  120 agcacaggtttgtacctagt 139  Q
    ||||| |||||||| |||||    
T  40586462 agcacgggtttgtaactagt 40586443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 42244455 - 42244356
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||    
T  42244455 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcgaaactaaattttaaaaaaatacgttattcaacccgtgcga 42244356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 9474045 - 9474147
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        |||||||||||||||||||||    
T  9474045 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcgaaactaaatttaaaaaaaatacgttattcaacccgtgcga 9474144  T
Q  120 agc 122  Q
    |||    
T  9474145 agc 9474147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 24055762 - 24055884
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa-ttttnnnnnnntacgttattcaacccgtgcg 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||       |||||||||||||| |||||    
T  24055762 tttgattttcacatttataaaagacaacaattttccgtaatttataagatttctccttcgaaactaaatttttaaaaaaatacgttattcaacctgtgcg 24055861  T
Q  119 aagcacaggtttgtacctagttt 141  Q
    |||||| |||||||| |||||||    
T  24055862 aagcacgggtttgtaactagttt 24055884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 8762935 - 8763056
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||        ||||||||||||||||||| |    
T  8762935 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctccttcaaaactaaatttaaaaaaaatacgttattcaacccgtgcaa 8763034  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  8763035 agcacgggtttgtaactagttt 8763056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 41158566 - 41158686
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||  ||||||||       |||||||||||||||||||||    
T  41158566 tttgattttcacatttataaaggacaataatttttcgtaatttataagatttctccttcaaagttaaatttttaaaaaatacgttattcaacccgtgcga 41158665  T
Q  120 agcacaggtttgtacctagtt 140  Q
    ||||| |||||||| ||||||    
T  41158666 agcacgggtttgtaactagtt 41158686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 1945110 - 1945229
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||        ||||||||||||||||||| |    
T  1945110 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctccttcaaaactaaatttaaaaaaaatacgttattcaacccgtgcaa 1945209  T
Q  120 agcacaggtttgtacctagt 139  Q
    ||||| |||||||| |||||    
T  1945210 agcacgggtttgtaactagt 1945229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 7391240 - 7391364
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt----nnnnnnntacgttattcaacccgt 115  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||            ||||||||||||||||    
T  7391240 tttgattttcacatttataaaggacaataattttccataatttataagatttctccttcgaaactaaattttaaaaaaaaaaaaacgttattcaacccgt 7391339  T
Q  116 gcgaagcacaggtttgtacctagtt 140  Q
    ||||||||| |||||||| ||||||    
T  7391340 gcgaagcacgggtttgtaactagtt 7391364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 25345916 - 25346037
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa--ttttnnnnnnntacgttattcaacccgtgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||  ||||       |||||||||||| ||||||    
T  25345916 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcggagctaaatttttttaaaaaatacgttattcaatccgtgc 25346015  T
Q  118 gaagcacaggtttgtacctagt 139  Q
    ||||||  |||||||| |||||    
T  25346016 gaagcatgggtttgtaactagt 25346037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 8160539 - 8160418
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||| ||||||         ||||||||||||||||||| |    
T  8160539 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctccttcaaaattaaattaaaaaaaaatacgttattcaacccgtgcaa 8160440  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  8160439 agcacgggtttgtaactagttt 8160418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 25834117 - 25833996
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||| |||||||||||        |||||||||||| |||||| |    
T  25834117 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctcattcaaaactaaatttaaaaaaaatacgttattcaatccgtgcaa 25834018  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  25834017 agcacgggtttgtaactagttt 25833996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 25618619 - 25618560
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25618619 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcg 25618560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 41978781 - 41978902
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    |||||||||||||||| |||| |||| |||||||||||||||||||| || ||||||| | | |||||||||       |||||||||||||||||||||    
T  41978781 tttgattttcacatttctaaaagacatcaattttccgtaatttataagatctctcctttggagctaaattttaaaaaaatacgttattcaacccgtgcga 41978880  T
Q  120 agcacaggtttgtacctagttt 141  Q
    |||||  |||| || |||||||    
T  41978881 agcacgagtttctaactagttt 41978902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 44380832 - 44380761
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||| | |||||||||    
T  44380832 tttgattttcacatttataaaggacaataatttttcgtaatttataagatttctccttcggagctaaatttt 44380761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 4464474 - 4464405
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattt 90  Q
    ||||||||||||||||||||||||||| |||||| ||| |||||||| ||||| |||||||||||||||||    
T  4464474 tttgattttcacatttataaaggacaataatttttcgt-atttataagatttcaccttcgaaactaaattt 4464405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 41531889 - 41531768
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    |||||||||  |||||||||| |||||||| |||||||||||||||| ||||||| ||||||  ||||||||       ||||||||||||||||||       
T  41531889 tttgatttttccatttataaatgacaacaactttccgtaatttataagatttctctttcgaagttaaatttttataaaatacgttattcaacccgtgttt 41531790  T
Q  120 agcacaggtttgtacctagttt 141  Q
     |||| |||||||| |||||||    
T  41531789 cgcacgggtttgtaactagttt 41531768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 32847118 - 32847188
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattt 90  Q
    ||||||||||||||||||||| ||||||||||||   |||||||||| ||||||||||| ||| |||||||    
T  32847118 tttgattttcacatttataaatgacaacaattttttataatttataagatttctccttcaaaattaaattt 32847188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 5836241 - 5836283
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||||||| ||||||||||||||||||||||||| |||||||    
T  5836241 tacgttattgaacccgtgcgaagcacaggtttgtaactagttt 5836283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 2961049 - 2961008
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  2961049 tacgttattcaacccgtgcgaagcacgggtttgtaactagtt 2961008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 27272687 - 27272728
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  27272687 tacgttattcaacccgtgcgaagcacgggtttgtaactagtt 27272728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 12249949 - 12249909
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  12249949 gttattcaacccgtgcgaagcacgggtttgtaactagtttt 12249909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 23626093 - 23626053
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  23626093 gttattcaacccgtgcgaagcacgggtttgtaactagtttt 23626053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 32569617 - 32569573
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtttta 143  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||    
T  32569617 tacgtaattcaacccgtgcgaagcacgggtttgtaactagtttta 32569573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 39445258 - 39445298
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  39445258 gttattcaacccgtgcgaagcacgggtttgtaactagtttt 39445298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 2680276 - 2680233
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||    
T  2680276 tacgtaattcaacccgtgcgaagcacgggtttgtaactagtttt 2680233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 6300528 - 6300486
Alignment:
Q  100 acgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    |||||||| |||||||||||||||| |||||||| ||||||||    
T  6300528 acgttattgaacccgtgcgaagcacgggtttgtaactagtttt 6300486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 27273879 - 27273921
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||||||| |||||||||||||||| |||||||| |||||||    
T  27273879 tacgttattgaacccgtgcgaagcacgggtttgtaactagttt 27273921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 37029917 - 37029959
Alignment:
Q  100 acgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    |||||||| |||||||||||||||| |||||||| ||||||||    
T  37029917 acgttattgaacccgtgcgaagcacgggtttgtaactagtttt 37029959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 41908015 - 41908053
Alignment:
Q  103 ttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  41908015 ttattcaacccgtgcgaagcacgggtttgtaactagttt 41908053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 42060701 - 42060660
Alignment:
Q  100 acgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    |||||||| |||||||||||||||| |||||||| |||||||    
T  42060701 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 42060660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 11697111 - 11697151
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||||||||||||| |||||| |||||||| |||||    
T  11697111 tacgttattcaacccgtgcaaagcacgggtttgtaactagt 11697151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 28940754 - 28940714
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||| |||||||||||||||||||| |||||||| |||||    
T  28940754 tacgtaattcaacccgtgcgaagcacgggtttgtaactagt 28940714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 2e-38; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 31896934 - 31896813
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||       ||||||||||||||||||||    
T  31896934 ttttgattttcacattgataaaggacaacaattttccgtaatttataagatttctccttcggaactaaatttttaaaaaatacgttattcaacccgtgcg 31896835  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  31896834 aagcacgggtttgtaactagtt 31896813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 9151341 - 9151454
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||       |||||||||||||||||||||    
T  9151341 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcggagctaaatttttaaaaaatacgttattcaacccgtgcga 9151440  T
Q  120 agcacaggtttgta 133  Q
    ||||| ||||||||    
T  9151441 agcacgggtttgta 9151454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 24682398 - 24682277
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||        |||||||||||||||||||     
T  24682398 ttttgattttcacatttataaatgacaacaattttctgtaatttataaaatttctccttcaaaactaaatttaaaaaaaatacgttattcaacccgtgca 24682299  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  24682298 aagcacgggtttgtaactagtt 24682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 39278160 - 39278281
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| | |||||||||       |||||||||||||||||||||    
T  39278160 tttgattttcacatttataaagaacaacaatttttcgtaatttataagatttctccttcggagctaaatttttaaaaaatacgttattcaacccgtgcga 39278259  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  39278260 agcacgggtttgtaactagttt 39278281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 44806500 - 44806619
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||       ||||| |||||||| ||||||    
T  44806500 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctcattcgaaactaaattttaaaaaaatacgtaattcaaccagtgcga 44806599  T
Q  120 agcacaggtttgtacctagt 139  Q
    ||||| | |||||| |||||    
T  44806600 agcacggatttgtaactagt 44806619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 21669351 - 21669230
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| | | |||||||||       |||||||||||||||||||||    
T  21669351 tttgattttcacatttataaagaacaacaatttttcgtaatttataagatttctcctttggagctaaatttttaaaaaatacgttattcaacccgtgcga 21669252  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  21669251 agcacgggtttgtaactagttt 21669230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 17172815 - 17172935
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| |||| |||||||||||       |||||||||||| |||||||    
T  17172815 ttttgattttcacattgataaaggacaacaattttccataatttataagatttctcattcggaactaaatttttaaaaaatacgttattcaatccgtgcg 17172914  T
Q  119 aagcacaggtttgtacctagt 139  Q
    |||||| |||||||| |||||    
T  17172915 aagcacgggtttgtaactagt 17172935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 35155608 - 35155537
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35155608 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcgaaactaaatttt 35155537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 39648101 - 39647981
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |  ||||||||       |||||||||||||||||||||    
T  39648101 tttgattttcacattgataaaggacaacaattttccgtaatttataagatttcttcttcggagttaaattttttaaaaatacgttattcaacccgtgcga 39648002  T
Q  120 agcacaggtttgtacctagtt 140  Q
    ||||| |||||||| ||||||    
T  39648001 agcacgggtttgtaactagtt 39647981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 7855082 - 7854965
Alignment:
Q  24 attttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt-nnnnnnntacgttattcaacccgtgcgaag- 121  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||||     
T  7855082 attttcacatttataaaggacaacaatttttcgtaatttataagatttctccttcgaaactaaattttaaaaaaaatacgttattcaacccgtgcgaagc 7854983  T
Q  122 cacaggtttgtacctagt 139  Q
    ||| |||||||| |||||    
T  7854982 cacgggtttgtaactagt 7854965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 34873742 - 34873813
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  34873742 tttgattttcatatttataaaggacaacaattttccgtaatttataagatttctcattcgaaactaaatttt 34873813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 21598071 - 21598003
Alignment:
Q  21 ttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatt 89  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  21598071 ttgattttcacatttataaaggacaacaattttctgtaatttataagatttctccttcgaaattaaatt 21598003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 27733069 - 27732952
Alignment:
Q  24 attttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa-ttttnnnnnnntacgttattcaacccgtgcgaagc 122  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| | | |||| ||||| ||||       |||||||||||||| |||||||||    
T  27733069 attttcacatttataaaagacaacaattttccgtaatttataaaatttcccatccgaagctaaatttttaaaaaaatacgttattcaaccagtgcgaagc 27732970  T
Q  123 acaggtttgtacctagtt 140  Q
    || |||||||| ||||||    
T  27732969 acgggtttgtaactagtt 27732952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 29469140 - 29469260
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||| |||||| ||||  |||||||||||       ||||||||||||||||||| |    
T  29469140 tttgattttcatatttataaagggtaacaattttccgtaatttataagatttctacttcagaactaaattttaaaaaaatacgttattcaacccgtgcaa 29469239  T
Q  120 agcacaggtttgtacctagtt 140  Q
    ||||| ||||| || ||||||    
T  29469240 agcacgggtttataactagtt 29469260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 48527532 - 48527406
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||  | ||||| |||       ||||||||||||||||||||    
T  48527532 ttttgattttcacattgataaaggacaacaatttttcgtaatttataagatttctccttcatagctaaaattttaaaaaatacgttattcaacccgtgcg 48527433  T
Q  119 aa---gcacaggtttgtacctagtttt 142  Q
    ||   |||| |||||||| ||||||||    
T  48527432 aattcgcacgggtttgtaactagtttt 48527406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 3795643 - 3795753
Alignment:
Q  29 cacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcgaagcacaggt 128  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||  |||||||||||       |||||||||||||||||||   |||| |||    
T  3795643 cacatttataaaggacaacaatttttcgtaatttataagatttctccttcagaactaaattttaaaaaaatacgttattcaacccgtgcttcgcacgggt 3795742  T
Q  129 ttgtacctagt 139  Q
    ||||| |||||    
T  3795743 ttgtaactagt 3795753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 11835078 - 11835010
Alignment:
Q  21 ttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatt 89  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||||    
T  11835078 ttgattttcacatttataaaggacaacaattttctgtaatttataagatttctccttcggaattaaatt 11835010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 49144154 - 49144084
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattt 90  Q
    ||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||  ||||||||||    
T  49144154 tttgattatcacatttataaaggacaacaattttccgtaatttaaaagatttctccttcagaactaaattt 49144084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 691214 - 691332
Alignment:
Q  24 attttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnn-tacgttattcaacccgtgcgaagc 122  Q
    |||||||| ||||||||| ||| |||||||   |||||||||| |||||||||||  |||||||||||        ||||||||||||||||||||||||    
T  691214 attttcacgtttataaagaacaccaattttttataatttataagatttctccttcagaactaaatttttaaaaaaatacgttattcaacccgtgcgaagc 691313  T
Q  123 acaggtttgtacctagttt 141  Q
    || |||||||| |||||||    
T  691314 acgggtttgtaactagttt 691332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 33636991 - 33636936
Alignment:
Q  24 attttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| || | |||||||    
T  33636991 attttcacatttataaaggacaacaattttccgtaatttataagatctttccttcg 33636936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 4850370 - 4850440
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattt 90  Q
    ||||||||||| |||||||||  ||||||||||||| |||||||||| |||| ||||||||| | ||||||    
T  4850370 tttgattttcatatttataaaaaacaacaattttccataatttataagatttatccttcgaagccaaattt 4850440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 12960608 - 12960649
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  12960608 tacgttattcaacccgtgcgaagcacgggtttgtaactagtt 12960649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 17817721 - 17817762
Alignment:
Q  100 acgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||||||||||||||||||||||| |||||||| |||||||    
T  17817721 acgttattcaacccgtgcgaagcacgggtttgtaactagttt 17817762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 9226058 - 9226019
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  9226058 gttattcaacccgtgcgaagcacgggtttgtaactagttt 9226019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 38434315 - 38434277
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  38434315 gttattcaacccgtgcgaagcacgggtttgtaactagtt 38434277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 42996945 - 42996987
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagttttaa 144  Q
    ||||||||||| ||||||||||| |||||||| ||||||||||    
T  42996945 gttattcaacctgtgcgaagcacgggtttgtaactagttttaa 42996987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 27840515 - 27840556
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||||||||||||| |||||| |||||||| ||||||    
T  27840515 tacgttattcaacccgtgcaaagcacgggtttgtaactagtt 27840556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 47573372 - 47573331
Alignment:
Q  100 acgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    |||||||| |||||||||||||||| |||||||| |||||||    
T  47573372 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 47573331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 15595430 - 15595466
Alignment:
Q  103 ttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    |||||||||||||||||||||| |||||||| |||||    
T  15595430 ttattcaacccgtgcgaagcacgggtttgtaactagt 15595466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 19049280 - 19049240
Alignment:
Q  100 acgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||||||||||||||||| || |||||||| ||||||    
T  19049280 acgttattcaacccgtgcgaagtacgggtttgtaactagtt 19049240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 9978827 - 9978707
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       || ||||||||||||||||||    
T  9978827 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcgaaactaaatttttaaaaaatatgttattcaacccgtgcga 9978728  T
Q  120 agcacaggtttgtacctagtt 140  Q
    |||||  ||||||| ||||||    
T  9978727 agcacgagtttgtaactagtt 9978707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 24447716 - 24447841
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| || ||||||||       ||||||||||||||||||||    
T  24447716 ttttgattttcacaatgataaaggacaacaattttccgtaatttataagatttctccttcggaattaaatttttaaaaaatacgttattcaacccgtgcg 24447815  T
Q  119 aagcacaggtttgtacctagttttaa 144  Q
    |||||| |||||||| ||||||||||    
T  24447816 aagcacgggtttgtaactagttttaa 24447841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 35160045 - 35160167
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| |||||  |||||||||||||||||| |||||| |||||||||||||||||       |||||||||||||||||||||    
T  35160045 tttgattttcacatttataaatgacaatcattttccgtaatttataagatttcttcttcgaaactaaatttttaaaaaatacgttattcaacccgtgcga 35160144  T
Q  120 agcacaggtttgtacctagtttt 142  Q
    ||||| | |||||| ||||||||    
T  35160145 agcacggatttgtaactagtttt 35160167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 15043947 - 15043827
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| | |||||||||       |||||||||||| ||||||||    
T  15043947 tttgattttcacatttataaagaacaacaatttttcgtaatttataagatttctccttcggagctaaatttttaaaaaatacgttattcaatccgtgcga 15043848  T
Q  120 agcacaggtttgtacctagtt 140  Q
    ||||| |||||||| ||||||    
T  15043847 agcacgggtttgtaactagtt 15043827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 4896081 - 4895958
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||  |||||||||||       ||||||||||||| ||||| |    
T  4896081 tttgattttcacatttataaagggtaacaattttccgtaatttataagatttctccttcagaactaaattttaaaaaaatacgttattcaactcgtgcaa 4895982  T
Q  120 agcacaggtttgtacctagtttta 143  Q
    |||||  ||||||| |||||||||    
T  4895981 agcacgtgtttgtaactagtttta 4895958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 4109978 - 4110047
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatt 89  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  4109978 tttgattttcacatttataaaggacaacaattttctgtaatttataagatttctccttcgaagctaaatt 4110047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 1222305 - 1222426
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa-ttttnnnnnnntacgttattcaacccgtgc 117  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| |||| ||||||| ||||       |||||||||||| || |||    
T  1222305 ttttgattttcacattgataaaggacaacaattttccataatttataagatttctcattcggaactaaatttttaaaaaaatacgttattcaatccatgc 1222404  T
Q  118 gaagcacaggtttgtacctagt 139  Q
    ||||||| |||||||| |||||    
T  1222405 gaagcacgggtttgtaactagt 1222426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 18320648 - 18320769
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||| |||| |||||||||||       ||||||||| || |||||||    
T  18320648 ttttgattttcacattgataaaagacaacaattttccataatttataagatttctcattcggaactaaatttttaaaaaatacgttatttaatccgtgcg 18320747  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    ||| || |||||||| ||||||    
T  18320748 aagtacgggtttgtaactagtt 18320769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 9735812 - 9735751
Alignment:
Q  24 attttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaacta 85  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  9735812 attttcacatttataaaagacaacaattttccgtaatttataagatttctccttcgaaacta 9735751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 33319682 - 33319563
Alignment:
Q  24 attttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa-ttttnnnnnnntacgttattcaacccgtgcgaagc 122  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||||||| |||| ||||       || |||||||||| ||||||||||    
T  33319682 attttcacatttataaatgacaataattttccgtaatttataagatttcttcttcgaaattaaattttttaaaaaatatgttattcaactcgtgcgaagc 33319583  T
Q  123 acaggtttgtacctagtttt 142  Q
    || | |||||| ||||||||    
T  33319582 acggatttgtaactagtttt 33319563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 6966357 - 6966234
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa-ttttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||    | ||||| |  |||| ||||       ||||||||||||||||||||    
T  6966357 tttgattttcacatttataaagaacaacaatttttcgtaatttataaaaaaaattcttcggagttaaattttttaaataatacgttattcaacccgtgcg 6966258  T
Q  119 aagcacaggtttgtacctagtttt 142  Q
    |||||| |||||||| ||||||||    
T  6966257 aagcacgggtttgtaactagtttt 6966234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 14832974 - 14833031
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctcctt 77  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||    
T  14832974 tttgattttcacatttataaaagacaacaattttccgtaatttataagatttttcctt 14833031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 33319050 - 33319094
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtttta 143  Q
    |||||||||||||||||||||||||| |||||||| |||||||||    
T  33319050 tacgttattcaacccgtgcgaagcacgggtttgtaactagtttta 33319094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 18389208 - 18389165
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    |||||||||||||||||||||||||| |||||||| ||||||||    
T  18389208 tacgttattcaacccgtgcgaagcacgggtttgtaactagtttt 18389165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 4110062 - 4110102
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  4110062 tacgttattcaacccgtgcgaagcacgggtttgtaactagt 4110102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 5753167 - 5753125
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||||||||||||||||||||| || |||||||| |||||||    
T  5753167 tacgttattcaacccgtgcgaagtacgggtttgtaactagttt 5753125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 11681710 - 11681668
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||| |||||||||||||||||||| |||||||| |||||||    
T  11681710 tacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 11681668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 22373180 - 22373138
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||    
T  22373180 tacgttattgaacccgtgcgaagcacatgtttgtaactagttt 22373138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 22975758 - 22975724
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgta 133  Q
    |||||||||||||||||||||||||||| ||||||    
T  22975758 tacgttattcaacccgtgcgaagcacagatttgta 22975724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 23812643 - 23812677
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgta 133  Q
    |||||||||||||||||||||||||||| ||||||    
T  23812643 tacgttattcaacccgtgcgaagcacagatttgta 23812677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 1932341 - 1932382
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  1932341 tacgatattcaacccgtgcgaagcacgggtttgtaactagtt 1932382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 2522025 - 2522066
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  2522025 tacgttattgaacccgtgcgaagcacgggtttgtaactagtt 2522066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 2624762 - 2624721
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||||||||||||||| |||| |||||||| ||||||    
T  2624762 tacgttattcaacccgtgcgatgcacgggtttgtaactagtt 2624721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 4425909 - 4425954
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttttaa 144  Q
    ||||||| |||||||||||||| ||| |||||||| ||||||||||    
T  4425909 tacgttagtcaacccgtgcgaaacacgggtttgtaactagttttaa 4425954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 13456774 - 13456734
Alignment:
Q  100 acgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||| |||||||||||||||| |||||||| ||||||    
T  13456774 acgttattgaacccgtgcgaagcacgggtttgtaactagtt 13456734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 18985226 - 18985190
Alignment:
Q  105 attcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    |||||||||||||||||||| |||||||| |||||||    
T  18985226 attcaacccgtgcgaagcacgggtttgtaactagttt 18985190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 14569 - 14692
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||       ||||||||||||||||||||    
T  14569 ttttgattttcacattcataaaggacaacaatttttcgtaatttataagatttctccttcggaactaaatttttaaaaaatacgttattcaacccgtgcg 14668  T
Q  119 aagcacaggtttgtacctagtttt 142  Q
    |||||| |||||||| ||||||||    
T  14669 aagcacgggtttgtaactagtttt 14692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 3759202 - 3759321
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||    
T  3759202 tttgattttcacatttataaatgacaacaattttccataatttataagatttctccttcgaaactaaattttaaaaaaatacgttattcaacccgtgcga 3759301  T
Q  120 agcacaggtttgtacctagt 139  Q
    ||||| |||||||| |||||    
T  3759302 agcacgggtttgtaactagt 3759321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 24549349 - 24549455
Alignment:
Q  24 attttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcgaagca 123  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  24549349 attttcacatttataaaggacaacaattttccgtaatttataacatttctccttcgaaactaaattttaaaaaaatacgttattcaacccgtgcgaagca 24549448  T
Q  124 caggttt 130  Q
    | |||||    
T  24549449 cgggttt 24549455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 17741585 - 17741706
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||| | |||||    
T  17741585 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcgaaactaaattttaaaaagatacgttattcaactcatgcga 17741684  T
Q  120 agcacaggtttgtacctagttt 141  Q
    | ||| |||||||| |||||||    
T  17741685 aacacgggtttgtaactagttt 17741706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 39404711 - 39404587
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||||||||       || ||||||||||||||||||    
T  39404711 tttgattttcacatttataaatgacaacaattttccgtaatttataagatttcgcctttgaaactaaattttaaaaaaatatgttattcaacccgtgcga 39404612  T
Q  120 agcacaggtttgtacctagttttaa 144  Q
    ||||| |||||||| ||||||||||    
T  39404611 agcacgggtttgtaactagttttaa 39404587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 9887390 - 9887267
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||       ||||||||||||||||||| |    
T  9887390 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctccttcaaaactaaattttaaaaaaatacgttattcaacccgtgcaa 9887291  T
Q  120 agcacaggtttgtacctagtttta 143  Q
    ||||| |||||||| |||||||||    
T  9887290 agcacgggtttgtaactagtttta 9887267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 20590926 - 20591048
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       || |||||||||||| |||||    
T  20590926 tttgattttcatatttataaaggacaacaattttccgtaatttataagatttctccttcgaaactaaattttaaaaaaatatgttattcaacccatgcga 20591025  T
Q  120 agcacaggtttgtacctagtttt 142  Q
    ||||| ||||||||  |||||||    
T  20591026 agcacgggtttgtaagtagtttt 20591048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 51347989 - 51348111
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||       ||| |||||||||||||||||    
T  51347989 tttgattttcacatttataaaggacaacaattttctgtaatttataagatttctccttcgaaactatattttaaaaaaatacattattcaacccgtgcga 51348088  T
Q  120 agcacaggtttgtacctagtttt 142  Q
    | ||| |||||||| ||||||||    
T  51348089 aacacgggtttgtaactagtttt 51348111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 30527707 - 30527587
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||        ||||||||||||||||| |||    
T  30527707 tttgattttcatatttataaaggacaacaattttccgtaatttataagatttctccttcaaaactaaatttaaaaaaaatacgttattcaacccgtacga 30527608  T
Q  120 agcacaggtttgtacctagtt 140  Q
    ||||| |||||||| ||||||    
T  30527607 agcacgggtttgtaactagtt 30527587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 16653117 - 16653237
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||        ||||||||||||||||||| |    
T  16653117 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctccttcaaaactaaatttaaaaaaaatacgttattcaacccgtgcaa 16653216  T
Q  120 agcacaggtttgtacctagtt 140  Q
    ||||| |||||||| ||||||    
T  16653217 agcacgggtttgtaactagtt 16653237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 39713616 - 39713496
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||| || ||||||||       ||||||||||||||||||||    
T  39713616 ttttgattttcacattgataaaagacaacaattttccataatttataagatttctccttcggaattaaatttttaaaaaatacgttattcaacccgtgcg 39713517  T
Q  119 aagcacaggtttgtacctagt 139  Q
    |||||| |||||||| |||||    
T  39713516 aagcacgggtttgtaactagt 39713496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 8532149 - 8532265
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | |||||||||       |||||||||||||||||||||    
T  8532149 tttgattttcacatttataaaggacaataattttccgtaatttataaaatttctccttctgagctaaatttt---gaaatacgttattcaacccgtgcga 8532245  T
Q  120 agcacaggtttgtacctagt 139  Q
    ||||| | |||||| |||||    
T  8532246 agcacggatttgtaactagt 8532265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 29713746 - 29713867
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||| |||||||||||  |||||||||||       ||||||||||||||||||| |    
T  29713746 tttgattttcacatttataaagggtaacaattttccataatttataagatttctccttcagaactaaattttaaaaaaatacgttattcaacccgtgcaa 29713845  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  29713846 agcacgggtttgtaactagttt 29713867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 35707769 - 35707656
Alignment:
Q  29 cacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa-ttttnnnnnnntacgttattcaacccgtgcgaagcacagg 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||       |||||||||||||||||||||||||| ||    
T  35707769 cacatttataaaggacaacaattttccgtaatttataagatttctccttcagaactaaatttttaaaaaaatacgttattcaacccgtgcgaagcacggg 35707670  T
Q  128 tttgtacctagttt 141  Q
    |||||| |||||||    
T  35707669 tttgtaactagttt 35707656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 8964756 - 8964876
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||| |||||||||||        ||||||||||||||||||| |    
T  8964756 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctcattcaaaactaaatttaaaaaaaatacgttattcaacccgtgcaa 8964855  T
Q  120 agcacaggtttgtacctagtt 140  Q
    ||||| |||||||| ||||||    
T  8964856 agcacgggtttgtaactagtt 8964876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 574288 - 574177
Alignment:
Q  29 cacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt-nnnnnnntacgttattcaacccgtgcgaagcacagg 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||        |||||||||||||||||||||||||| ||    
T  574288 cacatttataaaggacaacaattttccgtaatttataagatttctccttcagaactaaattttaaaaaaaatacgttattcaacccgtgcgaagcacggg 574189  T
Q  128 tttgtacctagt 139  Q
    |||||| |||||    
T  574188 tttgtaactagt 574177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 36741919 - 36741820
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||       ||||| |||||||||||||||    
T  36741919 tttgattttcacatttataaaggacaataatttttcgtaatttataagatttctccttcgaaactaaattttaaaaaaatacgtaattcaacccgtgcga 36741820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 13172869 - 13172942
Alignment:
Q  18 attttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13172869 attttgattttcaaatttataaatgacaacaattttccgtaatttataagatttctccttcgaaactaaatttt 13172942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 37352023 - 37352144
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||| |||||||||||        |||||||||||||| |||| |    
T  37352023 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctcattcaaaactaaatttaaaaaaaatacgttattcaacctgtgcaa 37352122  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  37352123 agcacgggtttgtaactagttt 37352144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 37356922 - 37357043
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||| |||||||||||        |||||||||||||| |||| |    
T  37356922 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctcattcaaaactaaatttaaaaaaaatacgttattcaacctgtgcaa 37357021  T
Q  120 agcacaggtttgtacctagttt 141  Q
    ||||| |||||||| |||||||    
T  37357022 agcacgggtttgtaactagttt 37357043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 52802855 - 52802952
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtg 116  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||       ||||||||||||||||||    
T  52802855 ttttgattttcacaatgataaaggacaacaattttccgtaatttataagatttctccttcggaactaaatttttaaaaaatacgttattcaacccgtg 52802952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 8989123 - 8989243
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||        || |||||||||||||||| |    
T  8989123 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctccttcaaaactaaatttaaaaaaaatatgttattcaacccgtgcaa 8989222  T
Q  120 agcacaggtttgtacctagtt 140  Q
    | ||| |||||||| ||||||    
T  8989223 aacacgggtttgtaactagtt 8989243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 24944251 - 24944180
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  24944251 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcataactaaatttt 24944180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 2118112 - 2118233
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt--nnnnnnntacgttattcaacccgtgc 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||  |||| |||||||||||         |||||||||||||||||||    
T  2118112 tttgattttcacatttataaaggacaacaattttccgt-atttataatatttctttttcggaactaaatttttaaaaaaaatacgttattcaacccgtgc 2118210  T
Q  118 gaagcacaggtttgtacctagtt 140  Q
    ||||||| |||||||| ||||||    
T  2118211 gaagcacgggtttgtaactagtt 2118233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 53991388 - 53991300
Alignment:
Q  29 cacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgc 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||       |||||||||||||||||||    
T  53991388 cacatttataaaggacaacaattttccgtaatttataagatttctccttcagaactaaattttaaaaaaatacgttattcaacccgtgc 53991300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 12680754 - 12680630
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt-----nnnnnnntacgttattcaacccg 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    |||||||||            ||||||||||||||||    
T  12680754 tttgattttcacatttataaaggacaataattttccgtaatttataagatttctccttctgggctaaatttttttaaaaaaaaatacgttattcaacccg 12680655  T
Q  115 tgcgaagcacaggtttgtacctagt 139  Q
    |||||||||| |||||||| |||||    
T  12680654 tgcgaagcacgggtttgtaactagt 12680630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 43023949 - 43024019
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattt 90  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||   ||||||||||    
T  43023949 tttgattttcacatttataaaggacaataattttccgtaatttataagatttctcctttagaactaaattt 43024019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 50043259 - 50043329
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattt 90  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||| |||||||    
T  50043259 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctccttcaaaattaaattt 50043329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 5759264 - 5759384
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa-ttttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| || ||| ||||||| |  |||| ||||       ||||||||||||||||||||    
T  5759264 tttgattttcacatttataaagaacaacaatttttcgtaatttat-aagtttttccttcggagttaaattttttaaataatacgttattcaacccgtgcg 5759362  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  5759363 aagcacgggtttgtaactagtt 5759384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 46106345 - 46106413
Alignment:
Q  21 ttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatt 89  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| | |||||||    
T  46106345 ttgattttcacatttataaatgacaacaattttccgtaatttataagatttctcgttcggagctaaatt 46106413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 47555546 - 47555475
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    |||||||||||||||||||||| ||||  ||||||| ||||||||||| ||||||| ||||||||||||||||    
T  47555546 ttttgattttcacatttataaatgacat-aattttctgtaatttataagatttctcattcgaaactaaatttt 47555475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 56541767 - 56541807
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  56541767 tacgttattcaacccgtgcgaagcacaggtttgtaactagt 56541807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 15650526 - 15650485
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  15650526 tacgttattcaacccgtgcgaagcacgggtttgtaactagtt 15650485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 23992360 - 23992319
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  23992360 tacgttattcaacccgtgcgaaacacaggtttgtaactagtt 23992319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 19591082 - 19591126
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtttta 143  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||    
T  19591082 tacgttattaaacccgtgcgaagcacgggtttgtaactagtttta 19591126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 43014631 - 43014591
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  43014631 tacgttattcaacccgtgcgaagcacgggtttgtaactagt 43014591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 41983572 - 41983529
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    ||||||||| |||||||||||||||| |||||||| ||||||||    
T  41983572 tacgttattgaacccgtgcgaagcacgggtttgtaactagtttt 41983529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 2777223 - 2777265
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||||||| |||||||||||||||| |||||||| |||||||    
T  2777223 tacgttattgaacccgtgcgaagcacgggtttgtaactagttt 2777265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 15521071 - 15521113
Alignment:
Q  100 acgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    |||||||| |||||||||||||||| |||||||| ||||||||    
T  15521071 acgttattgaacccgtgcgaagcacgggtttgtaactagtttt 15521113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 5271642 - 5271601
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  5271642 tacgttattgaacccgtgcgaagcacgggtttgtaactagtt 5271601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 21353965 - 21354006
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  21353965 tacgttattgaacccgtgcgaagcacgggtttgtaactagtt 21354006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 28134748 - 28134707
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||    
T  28134748 tacgttattgaacccgtgcgaagcacaagtttgtaactagtt 28134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 28974014 - 28974055
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagtttta 143  Q
    |||||| |||||||||||||||| |||||||| |||||||||    
T  28974014 gttattgaacccgtgcgaagcacgggtttgtaactagtttta 28974055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 50118183 - 50118154
Alignment:
Q  24 attttcacatttataaaggacaacaatttt 53  Q
    ||||||||||||||||||||||||||||||    
T  50118183 attttcacatttataaaggacaacaatttt 50118154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 3839135 - 3839095
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||||||||| |||||||||| |||||||| |||||    
T  3839135 tacgttattcaacccttgcgaagcacgggtttgtaactagt 3839095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 5483035 - 5483075
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||| |||||||||||||||||||| |||||||| |||||    
T  5483035 tacgtaattcaacccgtgcgaagcacgggtttgtaactagt 5483075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 14828843 - 14828803
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||| |||||||||||||||| |||||||| |||||    
T  14828843 tacgttattgaacccgtgcgaagcacgggtttgtaactagt 14828803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 16895951 - 16895991
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    |||||||||||||||||||||||||  |||||||| |||||    
T  16895951 tacgttattcaacccgtgcgaagcatgggtttgtaactagt 16895991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 27892678 - 27892642
Alignment:
Q  105 attcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    |||||||||||||||||||| |||||||| |||||||    
T  27892678 attcaacccgtgcgaagcacgggtttgtaactagttt 27892642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 4893889 - 4894011
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||       ||||||||||||||||||||    
T  4893889 ttttgattttcacaatgataaaggacaacaattttccgtaatttataagatttctccttcggaactaaatttttaaaaaatacgttattcaacccgtgcg 4893988  T
Q  119 aagcacaggtttgtacctagttt 141  Q
    |||||| |||||||| |||||||    
T  4893989 aagcacgggtttgtaactagttt 4894011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 19320540 - 19320418
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||       ||||||||||||||||||| |    
T  19320540 tttgattttcacatttaaaaaggacaacaattttccgtaatttataagatttctcattcgaaactaaattttaaaaaaatacgttattcaacccgtgcaa 19320441  T
Q  120 agcacaggtttgtacctagtttt 142  Q
    ||||| |||||||| ||||||||    
T  19320440 agcacgggtttgtaactagtttt 19320418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 10763519 - 10763633
Alignment:
Q  29 cacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcgaagcacaggt 128  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||       |||||||||||||||||||||||||| |||    
T  10763519 cacatttataaaggacaacagttttccgtaatttataagatttctccttcaaaactaaattttaaaaaaatacgttattcaacccgtgcgaagcacgggt 10763618  T
Q  129 ttgtacctagtttta 143  Q
    ||||| |||||||||    
T  10763619 ttgtaactagtttta 10763633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 29184598 - 29184475
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| |||| |||||||||||       |||||||||||| |||||||    
T  29184598 ttttgattttcacattgataaaggacaacaattttccataatttataagatttctcattcggaactaaatttttaaaaaatacgttattcaatccgtgcg 29184499  T
Q  119 aagcacaggtttgtacctagtttt 142  Q
    |||||| |||||||| ||||||||    
T  29184498 aagcacgggtttgtaactagtttt 29184475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 29840800 - 29840689
Alignment:
Q  29 cacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcgaagcacaggt 128  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||       |||||||||||||||||||||||||| |||    
T  29840800 cacatttataaaggacaacaatttttcgtaatttataagatttctccttcaaaactaaattttaaaaaaatacgttattcaacccgtgcgaagcacgggt 29840701  T
Q  129 ttgtacctagtt 140  Q
    ||||| ||||||    
T  29840700 ttgtaactagtt 29840689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 33363492 - 33363613
Alignment:
Q  18 attttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgc 117  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||| |||| |||||||||||       |||||||||||| ||||||    
T  33363492 attttgattttcacattgataaaggacaacaattttccataatttataagatttctcattcggaactaaatttttaaaaaatacgttattcaatccgtgc 33363591  T
Q  118 gaagcacaggtttgtacctagt 139  Q
    ||||||| |||||||| |||||    
T  33363592 gaagcacgggtttgtaactagt 33363613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 38896736 - 38896857
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataa-aatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| | ||| |||||||||||||||||||       ||||||||||||||||||||    
T  38896736 tttgattttcacatttataaatgacaacaattttctgtaatttataagattttttccttcgaaactaaattttaaaaaaatacgttattcaacccgtgcg 38896835  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  38896836 aagcacgggtttgtaactagtt 38896857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 28573082 - 28573202
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||        ||||||||||||||||||| |    
T  28573082 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctccttcaaaactaaatttaaaaaaaatacgttattcaacccgtgcaa 28573181  T
Q  120 agcacaggtttgtacctagtt 140  Q
    ||||| |||||||| ||||||    
T  28573182 agcacgggtttgtaactagtt 28573202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 1375904 - 1376030
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||| |||||||||||  |||||||||||       ||||||||||||||||||| |    
T  1375904 tttgattttcatatttataaagggtaacaattttccgtaatttataagatttctccttcagaactaaattttaaaaaaatacgttattcaacccgtgcaa 1376003  T
Q  120 agcacaggtttgtacctagttttaact 146  Q
    ||||| |||||||| ||||||| ||||    
T  1376004 agcacgggtttgtaactagtttaaact 1376030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 22194587 - 22194465
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||| |||||||||||| || ||||||||       ||||||||||||||||||| |    
T  22194587 tttgattttcatatttataaagggtaacaattttccgtaatttataagatttctccttcggaattaaattttaaaaaaatacgttattcaacccgtgcaa 22194488  T
Q  120 agcacaggtttgtacctagtttt 142  Q
    ||||| |||||||| ||||||||    
T  22194487 agcacgggtttgtaactagtttt 22194465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 47137780 - 47137901
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa-ttttnnnnnnntacgttattcaacccgtgcg 118  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||| | ||| ||||       ||||||||||||||||||||    
T  47137780 tttgatttttacatttataaaggacaacatttttccgtaatttataatatttctccttcgaagcgaaatttttaaaaagttacgttattcaacccgtgcg 47137879  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  47137880 aagcacgggtttgtaactagtt 47137901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 33074351 - 33074231
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||| |||||||||||  |||||||||||       ||||||||||||||||||| |    
T  33074351 tttgattttcacatttataaagggtaacaattttccataatttataagatttctccttcagaactaaattttaaaaaaatacgttattcaacccgtgcaa 33074252  T
Q  120 agcacaggtttgtacctagtt 140  Q
    ||||| |||||||| ||||||    
T  33074251 agcacgggtttgtaactagtt 33074231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 49587036 - 49587135
Alignment:
Q  18 attttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgc 117  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||    
T  49587036 attttgatttttacatttataaaggataataattttccgtaatttataagatttctccttcgaaactaaatttttaaaaaatacgttattcaacccgtgc 49587135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 42682522 - 42682635
Alignment:
Q  29 cacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt-nnnnnnntacgttattcaacccgtgcgaagcacagg 127  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||  |||||||||||        |||||||||||||||||||||||||| ||    
T  42682522 cacatttataaaggacaacaattttccgtaatttataagatttttccttcagaactaaattttaaaaaaaatacgttattcaacccgtgcgaagcacggg 42682621  T
Q  128 tttgtacctagttt 141  Q
    |||||| |||||||    
T  42682622 tttgtaactagttt 42682635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 50563394 - 50563465
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  50563394 tttgattttcacatttataaaggacaacaattttccataatttataagatttctccttcgaagctaaatttt 50563465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 24289321 - 24289200
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattt-tnnnnnnntacgttattcaacccgtgcg 118  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||| |||||||||||         |||||||||||||||||||     
T  24289321 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctcattcaaaactaaatttaaaaaaaaatacgttattcaacccgtgca 24289222  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  24289221 aagcacgggtttgtaactagtt 24289200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 46623497 - 46623376
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||| ||||||| |||||||||  |||| |||||| |||||||||||| ||||||||||||||||||||||||       ||||||||||||| ||||||    
T  46623497 tttttattttcatatttataaattacaataatttttcgtaatttataagatttctccttcgaaactaaattttaaaaaaatacgttattcaactcgtgcg 46623398  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| || ||||| ||||||    
T  46623397 aagcacgggattgtaactagtt 46623376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 1828360 - 1828456
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtg 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||  ||||||||||        ||||||||||||||||||    
T  1828360 tttgattttcacatttataaacgacaacaattttccgtaatttataagatttctccttcacaactaaatttaaaaaaaatacgttattcaacccgtg 1828456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 16302064 - 16302134
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattt 90  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||||| ||| ||||||||    
T  16302064 tttgattttcacatttataaaagacaacaattttacgtaatttataagatttatcctttgaagctaaattt 16302134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 51964583 - 51964532
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaattt 71  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  51964583 tttgattttcacatttataaaggacaacaactttccgtaatttataagattt 51964532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 5428237 - 5428306
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattt 90  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |||| | ||||||||    
T  5428237 tttgattttcacatttataaaagacaacaattttccgt-atttataagatttctctttcggagctaaattt 5428306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 3929788 - 3929746
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    |||||||||||||||||||||||||| |||||||| |||||||    
T  3929788 tacgttattcaacccgtgcgaagcacgggtttgtaactagttt 3929746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 28565470 - 28565428
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    |||||||||||||||||||||||||| |||||||| |||||||    
T  28565470 tacgttattcaacccgtgcgaagcacgggtttgtaactagttt 28565428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 28631815 - 28631856
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagtttta 143  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  28631815 gttattcaacccgtgcgaagcacgggtttgtaactagtttta 28631856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 29693389 - 29693432
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||    
T  29693389 tacgtaattcaacccgtgcgaagcacgggtttgtaactagtttt 29693432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 34265916 - 34265882
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgta 133  Q
    |||| ||||||||||||||||||||||||||||||    
T  34265916 tacgatattcaacccgtgcgaagcacaggtttgta 34265882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 20767557 - 20767598
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||||||| ||||||||||||| |||||||| ||||||    
T  20767557 tacgttattcaagccgtgcgaagcacgggtttgtaactagtt 20767598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 44407295 - 44407336
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  44407295 tacgttattgaacccgtgcgaagcacgggtttgtaactagtt 44407336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 48183210 - 48183173
Alignment:
Q  105 attcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  48183210 attcaacccgtgcgaagcacgggtttgtaactagtttt 48183173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 24294870 - 24294910
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||| |||||||||||||||| |||||||| |||||    
T  24294870 tacgttattgaacccgtgcgaagcacgggtttgtaactagt 24294910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 31620600 - 31620640
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||| |||||||||||||||| |||||||| |||||    
T  31620600 tacgttattgaacccgtgcgaagcacgggtttgtaactagt 31620640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 50395006 - 50394966
Alignment:
Q  100 acgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||| |||||||||||||||| |||||||| ||||||    
T  50395006 acgttattgaacccgtgcgaagcacgggtttgtaactagtt 50394966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 26100898 - 26100777
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa-ttttnnnnnnntacgttattcaacccgtgcg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||       ||| ||||||||||||||||    
T  26100898 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcgaaactaaattttttaaaaaatacattattcaacccgtgcg 26100799  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  26100798 aagcacgggtttgtaactagtt 26100777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 35860930 - 35861044
Alignment:
Q  26 tttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcgaagcaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||       ||||||||||||||||||||||||||     
T  35860930 tttcacatttataaaggacaacaattttccgtaatttataagatttctccttcataactaaattttaaaaaaatacgttattcaacccgtgcgaagcacg 35861029  T
Q  126 ggtttgtacctagtt 140  Q
    |||||||| ||||||    
T  35861030 ggtttgtaactagtt 35861044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 55290512 - 55290396
Alignment:
Q  24 attttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcgaagca 123  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||       ||||||||||||||||| |||||||    
T  55290512 attttcacatttataaaggacaacaattttccgtaatttataagatttccccttcggagctaaatttttaaaaaatacgttattcaacccgtacgaagca 55290413  T
Q  124 caggtttgtacctagtt 140  Q
    |||||||||| ||||||    
T  55290412 caggtttgtaactagtt 55290396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 4137522 - 4137399
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattt---tnnnnnnntacgttattcaacccgtg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||           ||||||||||||||||||    
T  4137522 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcgaagctaaatttaaaaaaaaaaatacgttattcaacccgtg 4137423  T
Q  117 cgaagcacaggtttgtacctagtt 140  Q
    |||||||| |||||||| ||||||    
T  4137422 cgaagcacgggtttgtaactagtt 4137399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 48519775 - 48519654
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||       |||||||||||||||||||      
T  48519775 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcggagctaaatttttaaaaaatacgttattcaacccgtgctt 48519676  T
Q  120 agcacaggtttgtacctagttt 141  Q
     |||| |||||||| |||||||    
T  48519675 cgcacgggtttgtaactagttt 48519654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 52843107 - 52843226
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||| ||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||       ||| ||||||||| |||||||    
T  52843107 tttgattttcatatttataaaggacgacaatttttcgtaatttataagatttctccttcgaaactaaatttttaaaaaatacattattcaactcgtgcga 52843206  T
Q  120 agcacaggtttgtacctagt 139  Q
    ||||| |||||||| |||||    
T  52843207 agcacgggtttgtaactagt 52843226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 22477836 - 22477950
Alignment:
Q  29 cacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt-nnnnnnntacgttattcaacccgtgcgaagcacagg 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||        |||||||||||||||||||||||||| ||    
T  22477836 cacatttataaaggacaacaattttccgtaatttataagatttctccttcagaactaaattttaaaaaaaatacgttattcaacccgtgcgaagcacggg 22477935  T
Q  128 tttgtacctagtttt 142  Q
    |||||| ||||||||    
T  22477936 tttgtaactagtttt 22477950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 28979727 - 28979656
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  28979727 tttgattttcacatttataaaggacaacaattttccttaatttataagatttctccttcgaaactaaatttt 28979656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 26776556 - 26776431
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa---ttttnnnnnnntacgttattcaacccgtg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |  ||||   ||||       || |||||||||||||||    
T  26776556 tttgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcggagttaaatttttttaaaaaaatatgttattcaacccgtg 26776457  T
Q  117 cgaagcacaggtttgtacctagtttt 142  Q
    |||||||| |||||||| ||||||||    
T  26776456 cgaagcacgggtttgtaactagtttt 26776431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 29528871 - 29528800
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||    
T  29528871 tttgattttcacatttataaaggacaacaattttccatattttataagatttctccttcgaaactaaatttt 29528800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 11951101 - 11950990
Alignment:
Q  29 cacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcgaagcacaggt 128  Q
    |||||||||||||||||| ||||||| ||||||||||| |||||||||||  |||||||||||       |||||||||||||||||||||||||  |||    
T  11951101 cacatttataaaggacaataattttctgtaatttataagatttctccttcagaactaaattttaaaaaaatacgttattcaacccgtgcgaagcatgggt 11951002  T
Q  129 ttgtacctagtt 140  Q
    ||||| ||||||    
T  11951001 ttgtaactagtt 11950990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 19893296 - 19893178
Alignment:
Q  22 tgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcgaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||       ||  |||||||||||||  ||||    
T  19893296 tgattttcacatttataaaggacaacaattttccgtaatttataagatttctccttcggagctaaatttttaaaaaata-attattcaacccgtatgaag 19893198  T
Q  122 cacaggtttgtacctagttt 141  Q
    ||| |||||||| |||||||    
T  19893197 cacgggtttgtaactagttt 19893178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 19360854 - 19360741
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    |||||||| |||||||||||| ||||||||||||  ||||||||||| |||||| |||||||||||||||||       ||||||||||||| | |||||    
T  19360854 tttgatttccacatttataaatgacaacaattttttgtaatttataagatttcttcttcgaaactaaattttaaaaaaatacgttattcaactcatgcga 19360755  T
Q  120 agcacaggtttgta 133  Q
    ||||| ||||||||    
T  19360754 agcacgggtttgta 19360741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 22522191 - 22522259
Alignment:
Q  21 ttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatt 89  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||||    
T  22522191 ttgattttcacatttataaaggacaacaattttctgtaatttataagatttctccttcggaattaaatt 22522259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 8396691 - 8396810
Alignment:
Q  24 attttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa-ttttnnnnnnntacgttattcaacccgtgcgaagc 122  Q
    |||||||| ||||||||| ||| ||||||| | |||||||||| |||||||||||  ||||||| ||||       ||||||||||||||||||||||||    
T  8396691 attttcacgtttataaagaacaccaatttttcataatttataagatttctccttcagaactaaattttttaaaaaatacgttattcaacccgtgcgaagc 8396790  T
Q  123 acaggtttgtacctagtttt 142  Q
    || |||||||| ||||||||    
T  8396791 acgggtttgtaactagtttt 8396810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 18688596 - 18688716
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaa-ttttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| || ||| ||||||| |  |||| ||||       ||||||||||||||||||||    
T  18688596 tttgattttcacatttataaagaacaacaatttttcgtaatttat-aagtttttccttcggagttaaattttttaaataatacgttattcaacccgtgcg 18688694  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    |||||| |||||||| ||||||    
T  18688695 aagcacgggtttgtaactagtt 18688716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 39094473 - 39094570
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgc 117  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||| ||||||||       |||||||||||| ||||||    
T  39094473 tttgatttttacatttataaaggacaataattttccgtaatttataagatttctctttcaaaattaaattttaaaaaaatacgttattcaatccgtgc 39094570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 53802285 - 53802355
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||  || | |||||||||||    
T  53802285 tttgattttcacatttataaaggacaacaattttccgt-atttataatatttcttttttggaactaaatttt 53802355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 30766507 - 30766547
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  30766507 tacgttattcaacccgtgcgaagcacaggtttgtaactagt 30766547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 12001545 - 12001426
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||  |||| ||||||||||||||||||||||||  | | ||| |||||   | | |||||||       |||||||||||||||||||||    
T  12001545 tttgattttcacgcttatgaaggacaacaattttccgtaatttgcaca-tttatcctttagagcaaaattttagaaaaatacgttattcaacccgtgcga 12001447  T
Q  120 agcacaggtttgtacctagtt 140  Q
    ||||| ||||||||| |||||    
T  12001446 agcacgggtttgtacgtagtt 12001426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 5240990 - 5241032
Alignment:
Q  100 acgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    ||||||||||||||||||||||||| |||||||| ||||||||    
T  5240990 acgttattcaacccgtgcgaagcacgggtttgtaactagtttt 5241032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 6103473 - 6103432
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  6103473 tacgttattgaacccgtgcgaagcacaggtttgtaactagtt 6103432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 188737 - 188777
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  188737 tacgttattcaacccgtgcgaagcacgggtttgtaactagt 188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 40817297 - 40817245
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttc 72  Q
    |||||||||||||||||||||| |||| |||||| |||||||| ||| |||||    
T  40817297 tttgattttcacatttataaagaacaataatttttcgtaatttgtaagatttc 40817245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 19353796 - 19353839
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtttt 142  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||    
T  19353796 tacgttattgaacccgtgcgaagcacagatttgtaactagtttt 19353839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 21165968 - 21165930
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  21165968 gttattcaacccgtgcgaagcacgggtttgtaactagtt 21165930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 22522275 - 22522317
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagttttaa 144  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||    
T  22522275 gttattcaacccgtgcgaagcacgggtttgtaactagtattaa 22522317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 50742297 - 50742339
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||||||| |||||||||||||||| |||||||| |||||||    
T  50742297 tacgttattgaacccgtgcgaagcacgggtttgtaactagttt 50742339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 39576535 - 39576575
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||||||| |||||||||||| |||||||| |||||    
T  39576535 tacgttattcaactcgtgcgaagcacgggtttgtaactagt 39576575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 41053811 - 41053847
Alignment:
Q  105 attcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    |||||||||||||||||||| |||||||| |||||||    
T  41053811 attcaacccgtgcgaagcacgggtttgtaactagttt 41053847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 11154 - 11277
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||       ||||||||||||||||||| |    
T  11154 tttgattttcacatttataaatgacaacaattttctgtaatttataagatttctccttcaaaactaaattttaaaaaaatacgttattcaacccgtgcaa 11253  T
Q  120 agcacaggtttgtacctagtttta 143  Q
    ||||| |||||||| |||||||||    
T  11254 agcacgggtttgtaactagtttta 11277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 139497 - 139617
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcga 119  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| ||||||||       ||||| |||||||||||||||    
T  139497 tttgattttcacatttataaaggacaacaattttctgtaatttataagatttctccttcaaaattaaattttaaaaaaatacgtaattcaacccgtgcga 139596  T
Q  120 agcacaggtttgtacctagtt 140  Q
    | |||  ||||||| ||||||    
T  139597 aacacgagtttgtaactagtt 139617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 233146 - 233216
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattt 90  Q
    |||||||||||||||||||||||||||||||||||   ||||||||| || ||| ||||||||||||||||    
T  233146 tttgattttcacatttataaaggacaacaattttctaaaatttataagatgtcttcttcgaaactaaattt 233216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 55481 - 55603
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt-nnnnnnntacgttattcaacccgtgcg 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| | || ||||||        ||||||||||||| ||||||    
T  55481 tttgatttttacatttataaaggacaacaattttccgtaatttataagatttttccttcggagctgaattttaaaaaaaatacgttattcaactcgtgcg 55580  T
Q  119 aagcacaggtttgtacctagttt 141  Q
    |||||| |||||||| |||||||    
T  55581 aagcacgggtttgtaactagttt 55603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 61714 - 61754
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  61714 tacgatattcaacccgtgcgaagcacgggtttgtaactagt 61754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 26147 - 26026
Alignment:
Q  19 ttttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgcg 118  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||| |||| |||||||||||       ||||||||| || |||||||    
T  26147 ttttgattttcacattgataaaagacaacaattttccataatttataagatttctcattcggaactaaatttttaaaaaatacgttatttaatccgtgcg 26048  T
Q  119 aagcacaggtttgtacctagtt 140  Q
    ||| || |||||||| ||||||    
T  26047 aagtacgggtttgtaactagtt 26026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 3544 - 3473
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| | |||||||||    
T  3544 tttgattttcacatttataaagaacaacaatttttcgtaatttataagatttctccttcggagctaaatttt 3473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 4295 - 4207
Alignment:
Q  29 cacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaattttnnnnnnntacgttattcaacccgtgc 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  || ||||||||       |||||||| ||||||||||    
T  4295 cacatttataaaggacaacaattttccgtaatttataagatttctccttcagaattaaattttaaaaaaatacgttatacaacccgtgc 4207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 14934 - 15005
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaatttctccttcgaaactaaatttt 91  Q
    |||||||||||||||||||||||  || |||||| |||||||||||| |||||| ||||||| |||||||||    
T  14934 tttgattttcacatttataaaggtaaataatttttcgtaatttataagatttcttcttcgaagctaaatttt 15005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 2964 - 2913
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaatttataaaattt 71  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  2964 tttgattttcacatttataaaagacaacaattttctgtaatttataagattt 2913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 8817 - 8778
Alignment:
Q  20 tttgattttcacatttataaaggacaacaattttccgtaa 59  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  8817 tttgattttcacatttataaaggacaacaattttctgtaa 8778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 24959 - 24917
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    |||||||||||||||||||||||||| |||||||| |||||||    
T  24959 tacgttattcaacccgtgcgaagcacgggtttgtaactagttt 24917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 13024 - 13066
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    |||||||||||||||||||||||||| |||||||| |||||||    
T  13024 tacgttattcaacccgtgcgaagcacgggtttgtaactagttt 13066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 12254 - 12213
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  12254 tacgttattgaacccgtgcgaagcacaggtttgtaactagtt 12213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 48566 - 48526
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  48566 tacgttattgaacccgtgcgaagcacaggtttgtaactagt 48526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 52730 - 52691
Alignment:
Q  102 gttattcaacccgtgcgaagcacaggtttgtacctagttt 141  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  52730 gttattcaacccgtgcgaagcacgggtttgtaactagttt 52691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 12956 - 12995
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctag 138  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  12956 tacgtaattcaacccgtgcgaagcacaggtttgtaactag 12995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 29679 - 29638
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  29679 tacgttattgaacccgtgcgaagcacgggtttgtaactagtt 29638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 143254 - 143213
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagtt 140  Q
    |||||||||||||| ||||||||||| |||||||| ||||||    
T  143254 tacgttattcaacctgtgcgaagcacgggtttgtaactagtt 143213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 25654 - 25614
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||| |||||||||||||||| |||||||| |||||    
T  25654 tacgttattgaacccgtgcgaagcacgggtttgtaactagt 25614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 10866 - 10906
Alignment:
Q  99 tacgttattcaacccgtgcgaagcacaggtttgtacctagt 139  Q
    ||||||||| |||||||||||||||| |||||||| |||||    
T  10866 tacgttattgaacccgtgcgaagcacgggtttgtaactagt 10906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University