View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12476_high_2 (Length: 284)
Name: NF12476_high_2
Description: NF12476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12476_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 28669006 - 28669260
Alignment:
| Q |
18 |
gtgttgacactaaacactgatcttacacagaagtagtaattgtattgagacgttgccacttcaccaaacatgtgccaaaaataatatttccgctgctgat |
117 |
Q |
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| T |
28669006 |
gtgttgacactaaacactgatcttacacagaagtagtaattgtattgagacgttgccacttcaccaaacatgtgccaaaaataatatttccgctactgat |
28669105 |
T |
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| Q |
118 |
ttccttttatagcttattctttgcaaattaatataaccgaaatatttcattgaatgatgtaagaaaagttgatcgaaattattcactgaaatttacatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28669106 |
ttccttttatagcttattctttgcaaattaatataaccgaaaattttcattgaatgatgtaaagaaagttgatcgaaattattcactgaaatttacatga |
28669205 |
T |
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| Q |
218 |
ctgcagttacttgtgaagatatgtcaaaagtaaacataaacagtatgatcacagg |
272 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28669206 |
ctgcagttagttgtgaagatatgtcaaaagtacacataaacagtatgatcacagg |
28669260 |
T |
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