View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12476_high_3 (Length: 216)
Name: NF12476_high_3
Description: NF12476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12476_high_3 |
 | |
|
| [»] scaffold0117 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0117 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 16497 - 16687
Alignment:
| Q |
13 |
gtagcataggattgtttggaatttgctgttggaaagaaaaatcaacacaaaacagaacttattagctataactataagcagaatgcacatagagaaagtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16497 |
gtagcataggattgtttggaatttgctgttagaaagaaaaatcaacacaaaacagaacttattagctataactataagcagaatgcacatagagaaagtt |
16596 |
T |
|
| Q |
113 |
agttaagatagtcataacatgatttatattatggcagcttgaaaatcaaagtatacatcaagatatatattcacatacattaccatgttta |
203 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16597 |
acttaagatagtcataacatgatttacattatggcagcttgaaaatcaaagtatacatcaagatatatattcacatacattaccatgttta |
16687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 888312 - 888195
Alignment:
| Q |
13 |
gtagcataggattgtttggaatttgctgttggaaagaaaaatcaacacaaaacagaacttattagctataactataagcagaatgcacatagagaaagtt |
112 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
888312 |
gtagcatgggattgttttgaatttgctgttagaaagaaaaatcaacagaaattagagcttattagctataactataagcagaatgcac--agagaaaatt |
888215 |
T |
|
| Q |
113 |
agttaagatagtcataacat |
132 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
888214 |
agttaagatagtcgtaacat |
888195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 48301284 - 48301407
Alignment:
| Q |
13 |
gtagcataggattgtttggaatttgctgttggaaagaaaaatcaacacaaaacagaacttattagctataactataagcagaatgcacatagagaaagtt |
112 |
Q |
| |
|
||||||||||||||| |||| |||| || | ||||||||||| || | |||| ||| | |||||||||| |||||||||||| ||| | ||||||| || |
|
|
| T |
48301284 |
gtagcataggattgtatggagtttgttgctagaaagaaaaataaaaataaaatagagcatattagctatgactataagcagactgcgc--agagaaaatt |
48301381 |
T |
|
| Q |
113 |
agttaagatagtcataacatgattta |
138 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
48301382 |
agttaagatagcaataacatgattta |
48301407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 38192368 - 38192449
Alignment:
| Q |
13 |
gtagcataggattgtttggaatttgctgttggaaagaaaaatcaacacaaaacagaacttattagctataactataagcaga |
94 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||||||||||| || |||| ||| ||| |||||||||||||| |||| |
|
|
| T |
38192368 |
gtagcataggattatttggaattttctgttagaaagaaaaatcagcataaaatagagtctatcagctataactataatcaga |
38192449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 20019954 - 20019998
Alignment:
| Q |
13 |
gtagcataggattgtttggaatttgctgttggaaagaaaaatcaa |
57 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| || ||||||||||| |
|
|
| T |
20019954 |
gtagcatagggttgtttggagtttgctgttagagagaaaaatcaa |
20019998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University