View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12476_low_1 (Length: 291)
Name: NF12476_low_1
Description: NF12476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12476_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 24632704 - 24632945
Alignment:
| Q |
19 |
aagaggagcttgctgctgctgcagaatccaaggagactgaaccaaagtaagtagttctatgaattcctagttgttagtgagttatttaattacgaaattt |
118 |
Q |
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| T |
24632704 |
aagaggagcttgctgctgctgcagaatccaaggagactgaaccaaagtaggtagttctatgaattcctagttgttagtgagttatttaattacgaaattt |
24632803 |
T |
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| Q |
119 |
tggtaattagttcctggaaaactacattctaaaaggaaaaactacagcaggggtccttgatcttaatttcgcgtcaatttaaagtttcaaacagctcgtt |
218 |
Q |
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| T |
24632804 |
tggtaattagttcctggaaaactacattctaaaaggaaaaactacagca-gggtccttgatcttaatttcgcgtcaatttaaagtttcaaacaggtcctt |
24632902 |
T |
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| Q |
219 |
gatcttgatttcgtgtcaatttagtcatttcttcatgtcatgt |
261 |
Q |
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| T |
24632903 |
gatcttgatttcgtgtcaatttagtcatttcttcatgtcatgt |
24632945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 72 - 258
Target Start/End: Complemental strand, 33385120 - 33384945
Alignment:
| Q |
72 |
gttctatgaattcctagttgttagtgagttatttaattacgaaattttggtaattagttcctggaaaactacattctaaaaggaaaaactacagcagggg |
171 |
Q |
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|||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| |
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| T |
33385120 |
gttctatgaattcctacttgttattgagttatttaattatgaaattttggtaattagttcctggaaaactacattctaaaagaacaaactacaacagggg |
33385021 |
T |
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| Q |
172 |
tccttgatcttaatttcgcgtcaatttaaagtttcaaacagctcgttgatcttgatttcgtgtcaatttagtcatttcttcatgtca |
258 |
Q |
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| T |
33385020 |
tcctttaactt-----------aatttaaaggttcaaacaagtccttgatattgttttcgtgttaatttagtcatttcttcatgtca |
33384945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 33415494 - 33415405
Alignment:
| Q |
31 |
ctgctgctgcagaatccaaggagactgaaccaaagtaa--gtagttctatgaattcctagttgttagtgagttatttaattacgaaattt |
118 |
Q |
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||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||| ||| |||||| ||||||||||||||| ||||||| |
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| T |
33415494 |
ctgctgccgcagaagccaaggagactgaaccaaagtaagtgtagttcaatgaatttctacttgttattgagttatttaattatgaaattt |
33415405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 9164765 - 9164707
Alignment:
| Q |
197 |
ttaaagtttcaaacagctcgttgatcttgatttcgtgtcaatttagtcatttcttcatg |
255 |
Q |
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| T |
9164765 |
ttaaagtttcaaacaggtccttgatcttgttttagtgtcaatttagtcatttcttcatg |
9164707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 33270185 - 33270122
Alignment:
| Q |
194 |
aatttaaagtttcaaacagctcgttgatcttgatttcgtgtcaatttagtcatttcttcatgtca |
258 |
Q |
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| T |
33270185 |
aatttaatgtttcaaacagatccttgatcttt-tttcgtgtcaatttagtcatttcttcatgtca |
33270122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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