View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12477_low_2 (Length: 347)
Name: NF12477_low_2
Description: NF12477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12477_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 2786256 - 2785958
Alignment:
| Q |
18 |
gttttcaaaccaagttttgtgactaatctagtgctagccacatttgtacaactatcactatcaattatcaaacaatagacttttccactaactaggcatc |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
2786256 |
gttttcaaaccaagttttatgactaatctagtgctagtcacatttgtacaactaccactatcaattatcaaacatcagactttttcactaactaggcatc |
2786157 |
T |
|
| Q |
118 |
tagtatgaaaaatgttttccctttgagaattatcattatctttaatctggactccaaggagtcttctaaccataagaagatacccttcaacaggagttac |
217 |
Q |
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| T |
2786156 |
tagtatgaaaaatattttccctttgagaattatcattatctttaatctggactccaatgagtcttctaaccataagaagatacccttcaacaggagttac |
2786057 |
T |
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| Q |
218 |
tttccattcaatttcattgtcacttgaagatgaatgtgaagaagaatgagatgaagaggaaacagtttcatacaaatctttgcctaatgaaatcataga |
316 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786056 |
ttcccattcaatttcattgtcacttgaagatgaatgtgaagaagaatgagatgaagaggaaacagtttcatacaaatctttgcctaatgaaatcataga |
2785958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 21798811 - 21798513
Alignment:
| Q |
18 |
gttttcaaaccaagttttgtgactaatctagtgctagccacatttgtacaactatcactatcaattatcaaacaatagacttttccactaactaggcatc |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| | |||||||||||||||||||||||| |
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| T |
21798811 |
gtttccaaaccaagttttgtgactaatctagtgctagccacatttgtacaactaccactgtcaataatcaaagagcagacttttccactaactaggcatc |
21798712 |
T |
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| Q |
118 |
tagtatgaaaaatgttttccctttgagaattatcattatctttaatctggactccaaggagtcttctaaccataagaagatacccttcaacaggagttac |
217 |
Q |
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| T |
21798711 |
tagtatgaaaaatgttttccctttgagaattatcattatccttaatctggactccaaggagtcttctaaccataagcaaatctccttcaacaggagctac |
21798612 |
T |
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| Q |
218 |
tttccattcaatttcattgtcacttgaagatgaatgtgaagaagaatgagatgaagaggaaacagtttcatacaaatctttgcctaatgaaatcataga |
316 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |
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| T |
21798611 |
ttcacattcaatttcattgtcacttgaagatgaatgtgaagaagaatgagatgaagaggaagcggtttcatacaaatctttacctaatgaaatcataga |
21798513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 27742824 - 27742524
Alignment:
| Q |
18 |
gttttcaaaccaagttttgtgactaatctagtgctagccacatttgtacaactatcactatcaattatcaaacaatagacttttccactaactaggcatc |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||| |||||||||||| |
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| T |
27742824 |
gttttcaaaccaagttttgtgactaatctagtgctagccacatttgtacaactaccactatcaattatcaaagagcaagtttttccattaactaggcatc |
27742725 |
T |
|
| Q |
118 |
tagtatgaaaaatgttttccctttgagaattatcattatctttaatctggactccaaggagtcttctaaccataagaagatacccttcaacaggagttac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | || ||||||| ||||| ||| |
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| T |
27742724 |
tagtatgaaaaatgttttccctttgagaattatcattatccttaatatggactccaaggagtcttctaaccataagcaaatctccttcaataggagctac |
27742625 |
T |
|
| Q |
218 |
tttccattcaatttcattgtcacttgaagatgaatgtgaagaagaatgagatgaaga--ggaaacagtttcatacaaatctttgcctaatgaaatcatag |
315 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |
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| T |
27742624 |
ttcatattcaatttcattgtcacttgaagatgaatgtgaagaagaatgagatgaagatcggaagcggtttcatacaaatctttgcctaatgaaatcatag |
27742525 |
T |
|
| Q |
316 |
a |
316 |
Q |
| |
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| |
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| T |
27742524 |
a |
27742524 |
T |
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