View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12477_low_3 (Length: 345)
Name: NF12477_low_3
Description: NF12477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12477_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 32938256 - 32938569
Alignment:
| Q |
17 |
acttcaatctttccttgcacgttgtttcttaagtagttagttgaatgcaacattgccaattcttgaaattccaacccatggtgaccttttcaaacgtgac |
116 |
Q |
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| T |
32938256 |
acttcaatctttccttgcacgttgtttcttaagtagttagttgaatgcaacattgccaattcttgaaattccaacccatggtgaccttttcaaacgtgac |
32938355 |
T |
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| Q |
117 |
atgtctgaccttcgaagatttactctttgaatgtagcttttactcgaataaatcatcacaagaatatttaaaactgtttgtttatgcacatgnnnnnnnt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
32938356 |
atgtctgaccttcgaagatttactctttgaatgtagcttttactcgaataaatcatctcaagaatatttaaaactgtttgtttatgcacatgaaaaaaat |
32938455 |
T |
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| Q |
217 |
ctcattcaacttacaccatcgttttcaaaactaaattttgaacttttcatcatataacaaaatgttgttctgtggtaaaaacttttaactaaagaaaatt |
316 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32938456 |
ctcattcaacttacaccatcggtttcaaaactaaattttgaacttttcatcatataacaaagtgttgttctgtggtaaaaacttttaactaaagaaaatt |
32938555 |
T |
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| Q |
317 |
atgtggtgaaaaca |
330 |
Q |
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|||||||||||||| |
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| T |
32938556 |
atgtggtgaaaaca |
32938569 |
T |
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