View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12478_high_2 (Length: 461)
Name: NF12478_high_2
Description: NF12478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12478_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 29461693 - 29461248
Alignment:
| Q |
1 |
tgagaaaccatcaaaccaataaaaggttgaacattttttcttcttccaaataacgtgatattgtggtttttgaaaaaccttgaatttactcatgtttggg |
100 |
Q |
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| T |
29461693 |
tgagaaaccatcaaaccaataaaaggttgaacattttttcttcttccaaataacatgatattgtggtttttaaaaaaccttgaatttactcatgtttggg |
29461594 |
T |
|
| Q |
101 |
caattcaagtcatagcataagnnnnnnnn---gtactgtcacaaacaaagaaacatatatagcagcataataagaatgaagtaactagttatgaacctgc |
197 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461593 |
caattcaagtcatagcataaaaaaaaaaaaaagtactgtcacaaacaaagaaacatatatagcagcataataagaatgaagtaactagttatgaacctgc |
29461494 |
T |
|
| Q |
198 |
aagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461493 |
aagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctc |
29461394 |
T |
|
| Q |
298 |
ttggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaagaaacttcctctattaaggccacaatatgcttcctcatcactct |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461393 |
ttggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaagaaacttcctctattaaggccacaatatgcttcctcatcactct |
29461294 |
T |
|
| Q |
398 |
catccatgttgtatcctttgttgttgctaccacttgctgcttcaat |
443 |
Q |
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| T |
29461293 |
catccatgttgtatcctttgttgttgctaccacttgctgcttcaat |
29461248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 168 - 355
Target Start/End: Complemental strand, 29426256 - 29426069
Alignment:
| Q |
168 |
taagaatgaagtaactagttatgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctca |
267 |
Q |
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||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29426256 |
taagaatgaggtaacttttaacgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctca |
29426157 |
T |
|
| Q |
268 |
gcaaaaccatttaacccattaagtaacctcttggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaaga |
355 |
Q |
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| T |
29426156 |
gcaaaaccattaagaccattaagtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgctaaga |
29426069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 29476656 - 29476603
Alignment:
| Q |
204 |
atcaagcaaagtggattttccagagccagaaggacccataatagccatgattct |
257 |
Q |
| |
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|||||| | ||| ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
29476656 |
atcaagaagagtagattttccagaaccagatggacccataatagccatgattct |
29476603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 37290273 - 37290237
Alignment:
| Q |
214 |
gtggattttccagagccagaaggacccataatagcca |
250 |
Q |
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| T |
37290273 |
gtggattttccagagccagatggacccataatagcca |
37290237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 36068412 - 36068327
Alignment:
| Q |
214 |
gtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
299 |
Q |
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|||| ||| ||| |||||||||||||||||| ||||||||| |||||||| |||||||||||| ||| |||| ||||||| |||| |
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| T |
36068412 |
gtggttttgccacagccagaaggacccataacagccatgatcctaccaggttcagcaaaaccagttacaccatcaagtaacttctt |
36068327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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