View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12478_high_5 (Length: 299)
Name: NF12478_high_5
Description: NF12478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12478_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 6623362 - 6623633
Alignment:
| Q |
19 |
agatgttcaatgattgctatctcctcacggatctcttctgaaaatacaccatttttattgttaacttccaaacatcgcttaacaaaccttgctgatctct |
118 |
Q |
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| T |
6623362 |
agatgttcaatgattgctatctcctcacggatctcttctgaaaatacaccatttttattgttaacttccaaacatcgcttaacaaaccttgctgatctct |
6623461 |
T |
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| Q |
119 |
ttctgagtagaaaccgaatcagaaacagcacaaacaagaaaacacacagaaccagcagtgaggtggttaaagcaatgaggagtacttttgtgtttgactt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6623462 |
ttctgagtagaaaccgaatcagaaacagcacaaacaagaaaacacacagaaccagcagtgaggtggttaaagcaatgaggagtacttttgtgtttgactt |
6623561 |
T |
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| Q |
219 |
gcactttttgaagctgcaaccaagagggtttggtggatcattagcaactatagttgttaaactcacaggttc |
290 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6623562 |
gcactttttgaagctgcaaccaagaggggttggtggatcattagcaactatagttgttaaactcactggttc |
6623633 |
T |
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