View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12478_high_6 (Length: 232)
Name: NF12478_high_6
Description: NF12478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12478_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 31792862 - 31793071
Alignment:
| Q |
5 |
tggagaagcagagacaaaaagaatagttctaggtggagcttgcattcttcttcaatgcgtgaaggtggaagatggtcgggaacaaatatacacatcacat |
104 |
Q |
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| T |
31792862 |
tggaaaagtagagacaaaaagaatagttctaggtggagcttgcattcttcttcaatgcgtgaaggtggaagatggtcgggaacaaatatacacatcacat |
31792961 |
T |
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| Q |
105 |
gcttctaccattttaacttgagagctgcatgtttgcacattatgcttacatgtctagaaatttgtaggacatagtcaaaactataaaaagagatttaaag |
204 |
Q |
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| T |
31792962 |
gcttctaccattttaacttgagagctgcatgtttgcacattatacttacatgtctagaaatttgtaggacatagtcaaaactataaaaagagacttacag |
31793061 |
T |
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| Q |
205 |
atgaaagaga |
214 |
Q |
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| T |
31793062 |
atgaaagaga |
31793071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 31806273 - 31806396
Alignment:
| Q |
72 |
gaagatggtcgggaacaaatatacacatcacatgcttctaccattttaacttgagagctgcatgt-ttgcacatta------tgcttacatgtctagaaa |
164 |
Q |
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| T |
31806273 |
gaagatgcttgggaacaaatatacacatcagatgcttcttccatcttgacttatgagctgcatgtcttgcacattacttgtgtgcttgcatgtctagaga |
31806372 |
T |
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| Q |
165 |
tttgtaggacatagtcaaaactat |
188 |
Q |
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| T |
31806373 |
tttgaaggccatagtataaactat |
31806396 |
T |
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