View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12478_low_1 (Length: 694)
Name: NF12478_low_1
Description: NF12478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12478_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 632; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 18 - 682
Target Start/End: Original strand, 4145006 - 4145670
Alignment:
| Q |
18 |
caatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggttccatcatcgtcgac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145006 |
caatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggttccatcatcgtcgac |
4145105 |
T |
|
| Q |
118 |
acctaaacgccaaccaaatagatattcggttgacattcttggcgttccaagaaaaacccttccattccatggaccagttctccaataaannnnnnnatct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4145106 |
acctaaacgccaaccaaatagatattcggttgacaatcttggcgttccgagaaaaactcttccattccatggaccagttctccaataaatttttttatct |
4145205 |
T |
|
| Q |
218 |
ttccaaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145206 |
ttccaaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaattt |
4145305 |
T |
|
| Q |
318 |
gcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145306 |
gcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtc |
4145405 |
T |
|
| Q |
418 |
tcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145406 |
tcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaa |
4145505 |
T |
|
| Q |
518 |
attacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145506 |
attacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgt |
4145605 |
T |
|
| Q |
618 |
accaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
682 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145606 |
accaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
4145670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 18 - 682
Target Start/End: Original strand, 4134204 - 4134868
Alignment:
| Q |
18 |
caatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggttccatcatcgtcgac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134204 |
caatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggttccatcatcgtcgac |
4134303 |
T |
|
| Q |
118 |
acctaaacgccaaccaaatagatattcggttgacattcttggcgttccaagaaaaacccttccattccatggaccagttctccaataaannnnnnnatct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4134304 |
acctaaacgccaaccaaatagatattcggttgacaatcttggcgttccgagaaaaacccttccattccatggaccagttctccaataaatttttttatct |
4134403 |
T |
|
| Q |
218 |
ttccaaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134404 |
ttccaaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaattt |
4134503 |
T |
|
| Q |
318 |
gcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtc |
417 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134504 |
gcttacctgtaactttattagatgcaattttcatcgatggaacagctgaatctgcagggtgtgtgaaactatcccagattgttgctccagaattgatgtc |
4134603 |
T |
|
| Q |
418 |
tcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaa |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
4134604 |
tcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgataccatttggtttgttcaat |
4134703 |
T |
|
| Q |
518 |
attacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgt |
617 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134704 |
attacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgt |
4134803 |
T |
|
| Q |
618 |
accaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
682 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134804 |
accaaattcctaagtaacggttgttcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
4134868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 22 - 674
Target Start/End: Original strand, 4123663 - 4124315
Alignment:
| Q |
22 |
caacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggttccatcatcgtcgacacct |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||| ||| | | |
|
|
| T |
4123663 |
caacttaagtgttccatgtggtgtcaatgacagaattccaaacatagttttgtcggcgaaattgtaagtaatataagtagttccatcattgtcttgaaca |
4123762 |
T |
|
| Q |
122 |
aaacgccaaccaaatagatattcggttgacattcttggcgttccaagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttcc |
221 |
Q |
| |
|
||| ||||||| || ||| | |||| |||| || || ||||| ||||||||| |||||||||||||||||||||||||| || ||| | || |
|
|
| T |
4123763 |
aaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggaccagttctccaatgaattttcttatcatacc |
4123862 |
T |
|
| Q |
222 |
aaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaatttgctt |
321 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| || | ||||||| |||||||||||||| ||||||||||||| |||||| | |||| ||| |
|
|
| T |
4123863 |
aaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcattatcactttttcttgatacaaaggatattttctt |
4123962 |
T |
|
| Q |
322 |
acctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctctt |
421 |
Q |
| |
|
|||||| |||| ||||| ||||||| |||| | ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
4123963 |
acctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctc |
4124062 |
T |
|
| Q |
422 |
agaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaatta |
521 |
Q |
| |
|
| ||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||| |
|
|
| T |
4124063 |
aaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatatta |
4124162 |
T |
|
| Q |
522 |
caagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgtacca |
621 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4124163 |
caagatttccatttttgtgaattgtgactattccatttgaatctttgagtggttgatctctgtttgcaatccatatattgttggtctcattgatgtacca |
4124262 |
T |
|
| Q |
622 |
aattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttga |
674 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4124263 |
aattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4124315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 674
Target Start/End: Original strand, 4153009 - 4153665
Alignment:
| Q |
18 |
caatcaacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggttccatcatcgtcgac |
117 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||| || || ||||| ||||| ||| |||| ||||||||| ||| |
|
|
| T |
4153009 |
caatcaacttgagtgttccatgcggtgtcaatgagagaattccgaacatagttttatcagcaaaattgtaagtaatataagtagttccatcagtgtcttg |
4153108 |
T |
|
| Q |
118 |
acctaaacgccaaccaaatagatattcggttgacattcttggcgttccaagaaaaacccttccattccatggaccagttctccaataaannnnnnnatct |
217 |
Q |
| |
|
| | ||||||||||| || ||| |||||| ||||||| || | ||| |||||||||||||||||||||||||| |||||||||| || |||| |
|
|
| T |
4153109 |
atcaaaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaacccttccattccatggacctgttctccaatgaatatttttatct |
4153208 |
T |
|
| Q |
218 |
ttccaaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaattt |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||| || | ||||||| |||||||||||||| ||||||||||||| |||||| | |||| |
|
|
| T |
4153209 |
ttccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcattatcactttttcttgatacaaaggatattt |
4153308 |
T |
|
| Q |
318 |
gcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtc |
417 |
Q |
| |
|
||||||||| |||| ||||| ||||||| |||| | ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||| || |
|
|
| T |
4153309 |
tcttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatc |
4153408 |
T |
|
| Q |
418 |
tcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaa |
517 |
Q |
| |
|
||| | ||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
|
|
| T |
4153409 |
tctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaat |
4153508 |
T |
|
| Q |
518 |
attacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgt |
617 |
Q |
| |
|
|||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
4153509 |
attataaaatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatattgttggtcttattgatgt |
4153608 |
T |
|
| Q |
618 |
accaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttga |
674 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4153609 |
accaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4153665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 22 - 674
Target Start/End: Original strand, 4163366 - 4164024
Alignment:
| Q |
22 |
caacttaagtgtcccatgtggtgtcaatgagagaattccaaacatagttttgtcggcgaaattataagttataaaagtggttccatcatcgtcgacacct |
121 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||| | |||| |||||||| | ||| | | |
|
|
| T |
4163366 |
caacttaagtgttccatttggtgtcaatgagagaattccaaacatagctttgacggcgaaatcataagttagataagtagttccatctttgtcttgatca |
4163465 |
T |
|
| Q |
122 |
aaacgccaaccaaatagatattcggttgacattcttggcgttccaagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttcc |
221 |
Q |
| |
|
||||||||||| || ||| |||||| ||||||| || | ||| ||||||||| ||||||||||||||||||||||||||| || ||| | || |
|
|
| T |
4163466 |
aaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaaccgttccattccatggaccagttctccaatgaattctcttatcatacc |
4163565 |
T |
|
| Q |
222 |
aaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaatttgctt |
321 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||| | || ||||||| |||||||||||||| ||||||||||||| |||||||| || | ||| |
|
|
| T |
4163566 |
aaataaaaacttctggtgcatccaatctttcaagacttcctatataatgtcctgaagaaggatcattttcactttttcttgatacaaaagatatattctt |
4163665 |
T |
|
| Q |
322 |
acctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctctt |
421 |
Q |
| |
|
|| || |||| |||||||||||| |||||| ||||||||| | ||| | |||||| |||||||||||||| ||||||| || |||||||||||| ||| |
|
|
| T |
4163666 |
ccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtcactt |
4163765 |
T |
|
| Q |
422 |
agaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaa----ga--tgaaatgtttgttgaccaaatgatgctgccatttggtttgttca |
515 |
Q |
| |
|
||||||||||| ||| ||||| |||||| |||||| |||||| ||||| || ||||||| ||||||||||||||||||| |||||| |||||||| |
|
|
| T |
4163766 |
agaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttca |
4163865 |
T |
|
| Q |
516 |
aaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgat |
615 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4163866 |
atattacaagatttccatttttgtgaattgtgactattccatttgaatccttgagtggttgatctctgtttgcaatccatatattgttggtctcattgat |
4163965 |
T |
|
| Q |
616 |
gtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttga |
674 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4163966 |
gtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4164024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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