View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12478_low_3 (Length: 415)
Name: NF12478_low_3
Description: NF12478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12478_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 8577678 - 8577867
Alignment:
| Q |
7 |
ggagcagagacaaatcaaatcaatatatatgtttccattgattttgatggataattattaaaaagatattttgactgtgtgactcaattgattgattttc |
106 |
Q |
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| T |
8577678 |
ggagtagagagaaatcaaatcaatatatatgtttccattaattttgatggataattattaaaaagatattttgattgtgtgactcaattcattgattttc |
8577777 |
T |
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| Q |
107 |
tttaatttatttaatagactaatttgtattttataaatttaaaggactaaattgctcaatctttacaattttgagggtcaaaatattatttaca |
200 |
Q |
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| T |
8577778 |
ttta----atttaatagactaatttgtattttataaatttaaaggactaaattgctcaatctttacaattttgagggtcaaaatattatttaca |
8577867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 224 - 388
Target Start/End: Original strand, 8577862 - 8578026
Alignment:
| Q |
224 |
tttacaaattacttcatatttgtcctaataatttactatcaactagattagccgctttctttttgttaaaccatttgctcaaagttcctaaacgttataa |
323 |
Q |
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| T |
8577862 |
tttacaaattacttcatatttgtcctaagaatttactatcagctagtttagccgctttctttttgttaaaccatttgctcaaagttactaaacgttataa |
8577961 |
T |
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| Q |
324 |
tctcttaaaacaatgattattactaaccaactctattaattatttaaattatctgttataatgag |
388 |
Q |
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| T |
8577962 |
tctcttaaaacaatgattattactaaccaactctattaattatttaaattatctgttataatgag |
8578026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 8603205 - 8603247
Alignment:
| Q |
134 |
attttataaatttaaaggactaaattgctcaatctttacaatt |
176 |
Q |
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| T |
8603205 |
attttgtatatttaaaagactaaattgctcaatctttacaatt |
8603247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 29086804 - 29086853
Alignment:
| Q |
133 |
tattttataaatttaaaggactaaattgctcaatctttacaattttgagg |
182 |
Q |
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| T |
29086804 |
tattttgtaaattgaagggactaaattgctcgatcattacaattttgagg |
29086853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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