View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12478_low_4 (Length: 378)
Name: NF12478_low_4
Description: NF12478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12478_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 21731809 - 21732160
Alignment:
| Q |
18 |
tgtgtgaaaaatgaaggagtccaaagttggaataagaatcaatgagtttggaggaaagagaagagttctgatggagaccatggaggaagaatctagcatg |
117 |
Q |
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| T |
21731809 |
tgtgtgaaaaatgaaggagtccaaagttggaataagaatcaatgagtttggaggaaagagaagagttttgatggagaccatggaggaagaatctagcatg |
21731908 |
T |
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| Q |
118 |
gatttgttgaaggtgttgtggttttgtgcagagatttaatatagaagaggttgtgttgaaaaaccttgttgtttgaaaaggtttaatgttggtgattttg |
217 |
Q |
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| T |
21731909 |
gatttgttgaaggtattgtggttttgtgcagagatttaatatagaagaggttgtgttgaaaaaccttgttgtttgaaaaggtttaatgttcgtgattttg |
21732008 |
T |
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| Q |
218 |
agaatgttaaggtagaccatgtctagaacttaacaaaaggcatctgatcgcgcgctacttacacacatgaaatgaaactgcacttggaaaagagaattca |
317 |
Q |
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| T |
21732009 |
agaatgttaaggtagaccatgtctagaacttaaccaaaggcatctgatcgcgcgctacttacttaca-cacatgaaactgcacttggaaaagagaattca |
21732107 |
T |
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| Q |
318 |
aatgagcaaatagtcactttaatcct-actttacacctcgttatcacacaggt |
369 |
Q |
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| T |
21732108 |
aacgagcaaatagtcgcttttttcctgactttgcacctcgttatcacaaaggt |
21732160 |
T |
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