View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12479_high_11 (Length: 288)

Name: NF12479_high_11
Description: NF12479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12479_high_11
NF12479_high_11
[»] chr7 (4 HSPs)
chr7 (1-288)||(6723983-6724269)
chr7 (176-215)||(22334221-22334260)
chr7 (141-214)||(11466937-11467010)
chr7 (125-169)||(4995902-4995945)
[»] chr5 (7 HSPs)
chr5 (129-262)||(18179279-18179410)
chr5 (129-199)||(20101000-20101070)
chr5 (175-260)||(30791606-30791690)
chr5 (130-198)||(16072261-16072329)
chr5 (126-198)||(19571017-19571090)
chr5 (189-262)||(7741250-7741323)
chr5 (142-207)||(20695926-20695991)
[»] chr8 (5 HSPs)
chr8 (124-281)||(6887069-6887214)
chr8 (141-188)||(13528979-13529026)
chr8 (141-188)||(13618518-13618565)
chr8 (139-221)||(35134469-35134551)
chr8 (228-281)||(8541772-8541825)
[»] chr4 (6 HSPs)
chr4 (126-245)||(21048325-21048442)
chr4 (125-199)||(18778301-18778375)
chr4 (129-261)||(33520125-33520256)
chr4 (129-194)||(8926417-8926482)
chr4 (139-207)||(42498738-42498807)
chr4 (150-215)||(9575847-9575912)
[»] chr2 (5 HSPs)
chr2 (126-219)||(31275245-31275338)
chr2 (129-193)||(25461225-25461289)
chr2 (139-191)||(19004576-19004628)
chr2 (126-245)||(21847297-21847415)
chr2 (40-89)||(13589906-13589955)
[»] chr1 (4 HSPs)
chr1 (173-262)||(28411527-28411614)
chr1 (127-233)||(23420498-23420602)
chr1 (144-215)||(23506766-23506837)
chr1 (126-221)||(33175505-33175600)
[»] chr3 (1 HSPs)
chr3 (126-212)||(7779421-7779507)
[»] chr6 (7 HSPs)
chr6 (129-262)||(21604662-21604793)
chr6 (174-262)||(26498765-26498851)
chr6 (141-279)||(12960292-12960423)
chr6 (151-261)||(12966952-12967060)
chr6 (151-261)||(12969138-12969246)
chr6 (151-261)||(12971324-12971432)
chr6 (126-245)||(16440501-16440618)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 6723983 - 6724269
Alignment:
Q  1 aagcataaggttcaactactggtagatgtgtgttgcgcactatgagttgcatgtcatgtagctaagaagaattcaaaagtggtcagctagtggtggatgc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6723983 aagcataaggttcaactactggtagatgtgtgttgcacactatgagttgcatgtcatgtagctaagaagaattcaaaagtggtcagctactggtggatgc 6724082  T
Q  101 gcaatgcatgcattaagttgtgtgacaccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagc 200  Q
    |||||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724083 gcaatgcatgtattaagttatgtgtcaccaaatcatacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagc 6724182  T
Q  201 ggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgtaccttccaatgcgagattactttgtt 288  Q
     ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6724183 agaaattgttagaaat-aatagaattaaaaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagattactttgtt 6724269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 22334221 - 22334260
Alignment:
Q  176 attgtcattcaacttggtaattagcggaatttgttagaaa 215  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  22334221 attgtcattcaacttggtaattagctgaatttattagaaa 22334260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 11466937 - 11467010
Alignment:
Q  141 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaa 214  Q
    ||||||||| |||||| ||||| ||||| |   ||||||||||||||||| | ||||||| |||||| ||||||    
T  11466937 aagtaataaagtagtaggttattgtctccacatggattgtcattcaacttagcaattagcagaatttattagaa 11467010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 4995902 - 4995945
Alignment:
Q  125 acaccaaatcgtacacaagtaataaggtagtaagttatcgtctct 169  Q
    |||||||||| ||| |||||||||| |||||||||||||||||||    
T  4995902 acaccaaatcatac-caagtaataaagtagtaagttatcgtctct 4995945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 262
Target Start/End: Complemental strand, 18179410 - 18179279
Alignment:
Q  129 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 228  Q
    |||||| || ||||||||||| |||||||||||| || || ||  | ||| || ||||||||||||| |||| |||||| ||||||||||| ||||||||    
T  18179410 caaatcataaacaagtaataaagtagtaagttattgtatccatatgcattatctttcaacttggtaaatagcagaatttattagaaataaa-agaattaa 18179312  T
Q  229 aaagagatgaagtggtttgtaggattttaattgt 262  Q
    || |||||||||||||||| ||||||||||||||    
T  18179311 aa-gagatgaagtggtttgcaggattttaattgt 18179279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 20101070 - 20101000
Alignment:
Q  129 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattag 199  Q
    |||||| ||| |||||||||| |||||||||||| ||||| || ||||||||| |||||||||||| ||||    
T  20101070 caaatcatactcaagtaataaagtagtaagttatagtctccataaggattgtcgttcaacttggtagttag 20101000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 30791690 - 30791606
Alignment:
Q  175 gattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaatt 260  Q
    ||||||| ||||| ||| ||||||||||||||| || |||||||| ||| || | || ||||||||||||||| ||| ||||||||    
T  30791690 gattgtcgttcaaattgataattagcggaatttatttgaaataaa-agattttagaaaagatgaagtggtttgcagggttttaatt 30791606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 16072329 - 16072261
Alignment:
Q  130 aaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaatta 198  Q
    ||||||||| ||||||| || ||||||||| || ||||| |  |||||||||| |||||||||||||||    
T  16072329 aaatcgtactcaagtaagaaagtagtaagtaattgtctccacaaggattgtcagtcaacttggtaatta 16072261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 19571090 - 19571017
Alignment:
Q  126 caccaaatcgtacacaagtaataaggtagtaagtt-atcgt-ctctatcaggattgtcattcaacttggtaatta 198  Q
    |||||||||||| |||| |||||| |||||||||| ||||| |||||  |||||||||||||||||| |||||||    
T  19571090 caccaaatcgta-acaaataataaagtagtaagtttatcgttctctacaaggattgtcattcaacttagtaatta 19571017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 7741250 - 7741323
Alignment:
Q  189 ttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgt 262  Q
    ||||||||| ||||||||| ||||||||||  | | | ||||| ||||||||||||||  | ||||||||||||    
T  7741250 ttggtaattggcggaatttattagaaataacaaaattaaaaaacagatgaagtggtttacaagattttaattgt 7741323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 20695991 - 20695926
Alignment:
Q  142 agtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaattt 207  Q
    |||||||| |||||||||||||||||| |   |||||||| ||||||| ||||||||  |||||||    
T  20695991 agtaataaagtagtaagttatcgtctccacagggattgtcgttcaactcggtaattataggaattt 20695926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 281
Target Start/End: Original strand, 6887069 - 6887214
Alignment:
Q  124 gacaccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaataga 223  Q
    ||||||||||| ||| |||||| |||  ||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||| |||||||||||        
T  6887069 gacaccaaatcatacccaagtattaaattagtaagttatcgtctccacaaggattgtcgttcaacttggtaattagcggaatttattagaaataaa---- 6887164  T
Q  224 attaaaaagagatgaagtggtttgtaggattttaattgtaccttccaatgcgagatta 281  Q
           |||||||||| ||||||||||||||||||||| |   ||||||||||||||    
T  6887165 -------agagatgaag-ggtttgtaggattttaattgtcctgcccaatgcgagatta 6887214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 13528979 - 13529026
Alignment:
Q  141 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaac 188  Q
    ||||||||| |||||||||||||||||| ||  |||||||||||||||    
T  13528979 aagtaataaagtagtaagttatcgtctccatatggattgtcattcaac 13529026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 13618518 - 13618565
Alignment:
Q  141 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaac 188  Q
    ||||||||| |||||||||||||||||| ||  |||||||||||||||    
T  13618518 aagtaataaagtagtaagttatcgtctccatatggattgtcattcaac 13618565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 35134469 - 35134551
Alignment:
Q  139 acaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaata 221  Q
    |||||||||||  |||| |||||  ||||| || ||||||||| || |||||||||||||||  ||||| |||||| ||||||    
T  35134469 acaagtaataaaatagtgagttactgtctccataaggattgtcgtttaacttggtaattagcaaaatttattagaagtaaata 35134551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 8541825 - 8541772
Alignment:
Q  228 aaaagagatgaagtggtttgtaggattttaattgtaccttccaatgcgagatta 281  Q
    |||||||||||||||||||| |||||||||||| | |   ||||||||||||||    
T  8541825 aaaagagatgaagtggtttgcaggattttaattattctgcccaatgcgagatta 8541772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 21048442 - 21048325
Alignment:
Q  126 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaat 225  Q
    ||||||||||||| ||| ||||||    ||||||||||||||  |  ||||||||  ||||||||||||||||||||||||| ||||||||||| |||||    
T  21048442 caccaaatcgtacgcaaataataaaaaggtaagttatcgtcttcacaaggattgttgttcaacttggtaattagcggaatttattagaaataaa-agaat 21048344  T
Q  226 taaaaagagatgaagtggtt 245  Q
    |  |||||||||||||||||    
T  21048343 t-taaagagatgaagtggtt 21048325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 18778375 - 18778301
Alignment:
Q  125 acaccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattag 199  Q
    ||||||||| |||| |||||||||| ||||||||||||||| || ||  |||||||| |||||||| ||||||||    
T  18778375 acaccaaattgtactcaagtaataaagtagtaagttatcgtttccatgtggattgtcgttcaactttgtaattag 18778301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 261
Target Start/End: Complemental strand, 33520256 - 33520125
Alignment:
Q  129 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 228  Q
    ||||||||| ||||||| ||| ||||||||||||  |||  || |  |||||| ||||||| | ||| ||| ||||||| ||| |||||||| ||||| |    
T  33520256 caaatcgtagacaagtagtaaagtagtaagttattctcttcataaaaattgtcgttcaactcgataaatagtggaatttattataaataaat-gaattta 33520158  T
Q  229 aaagagatgaagtggtttgtaggattttaattg 261  Q
    ||||||||||| ||||||  ||| |||||||||    
T  33520157 aaagagatgaaatggtttacagggttttaattg 33520125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 8926482 - 8926417
Alignment:
Q  129 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggta 194  Q
    |||||| ||| |||||||||| |||| ||||||||||||| ||  |||||||| ||||||||||||    
T  8926482 caaatcatactcaagtaataaagtagcaagttatcgtctccatagggattgtcgttcaacttggta 8926417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 42498807 - 42498738
Alignment:
Q  139 acaagtaataaggtagtaagtta-tcgtctctatcaggattgtcattcaacttggtaattagcggaattt 207  Q
    ||||||||||| ||||||||| | | || | ||| ||||||||| |||||||||||||||||||||||||    
T  42498807 acaagtaataatgtagtaagtgaattgtttttataaggattgtcgttcaacttggtaattagcggaattt 42498738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 9575912 - 9575847
Alignment:
Q  150 ggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaa 215  Q
    |||||||| || ||||||||||   ||||||| ||||||||| ||||||||||||| | |||||||    
T  9575912 ggtagtaaattgtcgtctctatagagattgtcgttcaacttgataattagcggaatatattagaaa 9575847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 31275338 - 31275245
Alignment:
Q  126 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaa 219  Q
    |||||||||||| ||||||||||| |||||||||||||||||| || ||||||||  ||| ||||||||| |||  ||| || |||||||||||    
T  31275338 caccaaatcgtaaacaagtaataaagtagtaagttatcgtctccataaggattgttgttccacttggtaaatagaagaacttattagaaataaa 31275245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 25461289 - 25461225
Alignment:
Q  129 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggt 193  Q
    ||||| ||||||||||||||| |||||||||||||||||| |   |||||||| |||||||||||    
T  25461289 caaattgtacacaagtaataaagtagtaagttatcgtctccaaatggattgtcgttcaacttggt 25461225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 19004576 - 19004628
Alignment:
Q  139 acaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttg 191  Q
    |||| |||||| |||||||||||||||||||||  |||||||| |||||||||    
T  19004576 acaaataataaagtagtaagttatcgtctctatatggattgtcgttcaacttg 19004628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 21847297 - 21847415
Alignment:
Q  126 caccaaatcgtacacaagtaa-taaggtagtaagttatcgtctctatca-ggattgtcattcaacttggtaattagcggaatttgttagaaataaataga 223  Q
    |||||||||||| | |||||| ||| ||| |||| |||||| ||| ||| ||||||||||||||||| |||||||| || |||| |||||||| || | |    
T  21847297 caccaaatcgtaaataagtaactaaagtactaagctatcgtatct-tcatggattgtcattcaacttagtaattagtgggatttattagaaatcaaaata 21847395  T
Q  224 attaaaaagagatgaagtggtt 245  Q
    ||  ||||||||| ||||||||    
T  21847396 at--aaaagagataaagtggtt 21847415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 13589955 - 13589906
Alignment:
Q  40 ctatgagttgcatgtcatgtagctaagaagaattcaaaagtggtcagcta 89  Q
    ||||||||||||||||  | | |||||||| |||||||||||||||||||    
T  13589955 ctatgagttgcatgtcgcgcatctaagaaggattcaaaagtggtcagcta 13589906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 28411614 - 28411527
Alignment:
Q  173 aggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgt 262  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||| || | |||| |||||||||||||||||||||||  ||||||||||    
T  28411614 aggattgccattcaactcgttaattagcggaatttattagaaat-aacaaaatt-aaaagagatgaagtggtttgtagtgttttaattgt 28411527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 23420498 - 23420602
Alignment:
Q  127 accaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaatt 226  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |  ||||||||| |||||||| | ||||| | |||||| ||||||   ||||||||     
T  23420498 accaaatcgta-acaagtaataaagtagtaagttatcgtctccacaaggattgtcgttcaacttagcaattaac-gaatttattagaagcgaatagaatg 23420595  T
Q  227 aaaaaga 233  Q
    |||||||    
T  23420596 aaaaaga 23420602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 23506837 - 23506766
Alignment:
Q  144 taataaggtagtaagttatcgtctctatcag-gattgtcattcaacttggtaattagcggaatttgttagaaa 215  Q
    |||||| |||||||||||||||||||| ||| || |||| |||||||||||||||||| |||||| |||||||    
T  23506837 taataaagtagtaagttatcgtctcta-cagtgaatgtcgttcaacttggtaattagcagaatttattagaaa 23506766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 33175505 - 33175600
Alignment:
Q  126 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaata 221  Q
    ||||||||| || |||||||||||  |||||||||||| |||| |    ||||||| |||||||| | |||||| ||||||| |||||| ||||||    
T  33175505 caccaaatcataaacaagtaataaaatagtaagttatcttctccacatagattgtcgttcaacttagcaattagaggaatttattagaagtaaata 33175600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 7779421 - 7779507
Alignment:
Q  126 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttag 212  Q
    ||||||||| ||  |||||| |||| | ||||||||| ||||| || |||||||||||||||| |||||| |||| |||||| ||||    
T  7779421 caccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggattgtcattcaacatggtaaatagcagaatttattag 7779507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 262
Target Start/End: Original strand, 21604662 - 21604793
Alignment:
Q  129 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 228  Q
    |||||| ||| ||| |||||| |||||||| |||| |||  |  | |||||||  |||||| | |||||||||||||||  || |||||| |||||||||    
T  21604662 caaatcttacgcaaataataaagtagtaagctatcatctacacaaagattgtcgctcaactagataattagcggaatttactataaataa-tagaattaa 21604760  T
Q  229 aaagagatgaagtggtttgtaggattttaattgt 262  Q
    || ||||||||||| |||| |||| |||||||||    
T  21604761 aa-gagatgaagtgatttgcaggaatttaattgt 21604793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 26498765 - 26498851
Alignment:
Q  174 ggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgt 262  Q
    |||||||| ||||||||||||||||| ||||||| |||||| |||  |||||| | || ||| ||||| |||||| || ||||||||||    
T  26498765 ggattgtcgttcaacttggtaattagaggaatttattagaagtaa--agaatttataaaagacgaagttgtttgttgggttttaattgt 26498851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 12960292 - 12960423
Alignment:
Q  141 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaag 240  Q
    ||||||||| ||  ||||||| |||||| || | ||||||| ||||||||||||||||| | ||||| ||| || |||| | |||  ||||||||| |||    
T  12960292 aagtaataaagtcataagttaccgtctccataaagattgtcgttcaacttggtaattagagaaatttcttaaaagtaaaaaaaat--aaaagagataaag 12960389  T
Q  241 tggtttgtaggattttaattgtaccttccaatgcgagat 279  Q
         ||||||||||||||||| | | ||||||||||||    
T  12960390 -----tgtaggattttaattgtccttcccaatgcgagat 12960423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 12966952 - 12967060
Alignment:
Q  151 gtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtag 250  Q
    ||||||||||||||||||  |  ||||| |||||||||| ||||||| |||| |||| |||||| |  | |||||| | || ||||||||||||||||      
T  12966952 gtagtaagttatcgtctccgtagggattatcattcaactcggtaattggcggcatttattagaagt--agagaatttagaaaagatgaagtggtttgtga 12967049  T
Q  251 gattttaattg 261  Q
    | |||||||||    
T  12967050 ggttttaattg 12967060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 12969138 - 12969246
Alignment:
Q  151 gtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtag 250  Q
    ||||| ||||||||||||  |  ||||| |||||||||| ||||||| ||||||||| |||||| |  | |||||| | || ||||||||||||||||      
T  12969138 gtagtcagttatcgtctccgtagggattatcattcaactcggtaattggcggaatttattagaagt--agagaatttagaaaagatgaagtggtttgtga 12969235  T
Q  251 gattttaattg 261  Q
    | |||||||||    
T  12969236 ggttttaattg 12969246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 12971324 - 12971432
Alignment:
Q  151 gtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtag 250  Q
    ||||| ||||||||||||  |  ||||| |||||||||| ||||||| ||||||||| |||||| |  | |||||| | || ||||||||||||||||      
T  12971324 gtagtcagttatcgtctccgtagggattatcattcaactcggtaattggcggaatttattagaagt--agagaatttagaaaagatgaagtggtttgtga 12971421  T
Q  251 gattttaattg 261  Q
    | |||||||||    
T  12971422 ggttttaattg 12971432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 16440618 - 16440501
Alignment:
Q  126 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaat 225  Q
    ||||||||| |||| | |||| || |||||||||||||| |||||  ||||| ||  |||||||  | |||||||||||||| ||| || |||||| |||    
T  16440618 caccaaatcatacataggtaaaaaagtagtaagttatcgcctctacaaggatcgttgttcaactaagcaattagcggaatttattataagtaaataaaat 16440519  T
Q  226 taaaaagagatgaagtggtt 245  Q
      ||||||||| || |||||    
T  16440518 --aaaagagataaactggtt 16440501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University