View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12479_high_4 (Length: 442)
Name: NF12479_high_4
Description: NF12479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12479_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 42087337 - 42087755
Alignment:
| Q |
18 |
aactctagttatgttacaatataattgcaagaaccaaagtaccaacttacctctgattgcaaagactctttctcttccttaaggcactgaaacttagaag |
117 |
Q |
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| T |
42087337 |
aactatagttatgttacaatataattgcaagaaccaaagtactaacttacctctgattgcaaagactctttctcttccttaaggcactgaaacttagaag |
42087436 |
T |
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| Q |
118 |
ctaaattatcataatcatctttgagttttctgtattcttgttctatcctttttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtct |
217 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087437 |
ctaaattatcatattcatctttgagttttctgtattcttgttctatcctttttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtct |
42087536 |
T |
|
| Q |
218 |
aggctgcaaaccaagatctcttgcaagttgcatcttcttccttggttccaactttgattctgactcaaatatgcattctagtgatcttatctgttcatca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087537 |
aggctgcaaaccaagatctcttgcaagttgcatcttcttccttggttccaactttgattctgactcaaatatgcattctagtgatcttatctgttcatca |
42087636 |
T |
|
| Q |
318 |
ctaaaccttctcttgttttctatcttcttgtttttcttctttgaattctgaggtgtctccaagcaactcatgctttcaacattttttcctttaaaccctt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42087637 |
ctaaaccttctcttgttttctatcttcttgtttttcttctttgaattctgaggtgtctctaagcaactcatgctttcaacattttttcctttaaaccctt |
42087736 |
T |
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| Q |
418 |
catgaatattctctgcttc |
436 |
Q |
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| T |
42087737 |
catgaatattctcttcttc |
42087755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 39342750 - 39342692
Alignment:
| Q |
174 |
ttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaag |
232 |
Q |
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| T |
39342750 |
ttccatcttgctctcctgttttggaaccaaacagctacttgtctaggctgcaacccaag |
39342692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 9379118 - 9379021
Alignment:
| Q |
168 |
tttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcatcttcttccttggttc |
265 |
Q |
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| T |
9379118 |
tttgatttccatctagctcttttgttttgaaaccatatagcaacttgtcttggctgcaatccaagctctctagctaactgcaacttctttcttggttc |
9379021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 24692391 - 24692455
Alignment:
| Q |
186 |
cttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcat |
250 |
Q |
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| T |
24692391 |
cttctgttttgaaaccatatagcaatttgtcttggctgcaatccaagagctcttgctagctgcat |
24692455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 16762999 - 16763066
Alignment:
| Q |
180 |
cttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttg |
247 |
Q |
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| T |
16762999 |
cttgcccttctgttttgaaaccatatagcaacttgtcttggttgcaaaccaagctcttttgcaagttg |
16763066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 17181907 - 17181983
Alignment:
| Q |
174 |
ttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcat |
250 |
Q |
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||||||||||| ||||| || |||||||||||||||||||||||||| ||||| |||| |||||||||| ||||| |
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| T |
17181907 |
ttccatcttgcccttctattttgaaaccatatagcaacttgtctaggttgcaagttaagagctcttgcaagctgcat |
17181983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 2342778 - 2342836
Alignment:
| Q |
168 |
tttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaa |
226 |
Q |
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|||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
2342778 |
tttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaa |
2342836 |
T |
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