View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12479_high_6 (Length: 403)
Name: NF12479_high_6
Description: NF12479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12479_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 109 - 403
Target Start/End: Original strand, 28035142 - 28035437
Alignment:
| Q |
109 |
agtatatattaaatcaatggaatcctctggtacctcttgattgataaagttccaacctacttttggcttctggtaaaattgcttgaannnnnnnn-ctgc |
207 |
Q |
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| T |
28035142 |
agtatatattaaatcaatggaatcctctggtacctcttgattgataaagttccaacctacttttggcttctggtaaaattgcttcaatttttttttctgc |
28035241 |
T |
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| Q |
208 |
cattatatgtgtttgctttgtgcaccactcaagtactattaacacctcctcttgtccaagagtctcatttttaggaacatgtagcgcaacgaaacacaaa |
307 |
Q |
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| T |
28035242 |
cattatatgtgtttgctttgtgcaccactcaagtactattaacacctcctcttgtccaagagtctcatttttaggaacatgtagcgcaacgaaacacaaa |
28035341 |
T |
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| Q |
308 |
agaagcaacgaaggaatttgcaccatttgttccccaaagtaaactagttgaatgagatgcttagcaccacctgcttctataatagcattgcaatga |
403 |
Q |
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| T |
28035342 |
agaagcaacgaaggaatttgcaccatttgttccccaaagtaaactagttgaatgagatgcttagcaccacctgcttctataatagcattgcaatga |
28035437 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 8758077 - 8758023
Alignment:
| Q |
125 |
atggaatcctctggtacctcttgattgataaagttccaacctacttttggcttct |
179 |
Q |
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|||||||||||| | |||||| || |||||||| ||||||||||| ||||||||| |
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| T |
8758077 |
atggaatcctcttgaacctctagactgataaagctccaacctactcttggcttct |
8758023 |
T |
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