View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12479_high_7 (Length: 384)
Name: NF12479_high_7
Description: NF12479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12479_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 321
Target Start/End: Original strand, 46279020 - 46279336
Alignment:
| Q |
5 |
cagaacagaaacaaacaagaaagtggcaacactttaaatagagatgacatacacacacaacaatatttatgaaatattgtttccaaaattctgaagatac |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46279020 |
cagaacagaaacaaacaagaaagtggcaacactttaaatagagatgacatacacacacaacaatatttatgaaatattgtttccaaaattctgaagatac |
46279119 |
T |
|
| Q |
105 |
ctcaccacataacattccaaaaaggaaagcaaagaaataacacagcaatgcataatgcattttattctgagcctgactgacacaaaaaggaggaggtgat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46279120 |
ctcaccacataacattccaaaaaggaaagcaaagaaataacacagcaatgcataatgcattttattctgagcctgactgacacaaaaaggaggaggtgat |
46279219 |
T |
|
| Q |
205 |
gataaggggtgcaagtacggtagcatgttaattaaatgcggttgttgtatgcttcccaaggtttttccatggattggtgaaattgttcaaattgatgctg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46279220 |
gataaggggtgcaagtacggtagcatgttaattaaatgcggttgttgtatgcttcccaaggtttttccatggattggtgaaattgttcaaattgatgctg |
46279319 |
T |
|
| Q |
305 |
caaacaatttcatgatt |
321 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
46279320 |
caaacaatttcatgatt |
46279336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University