View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12479_high_9 (Length: 316)

Name: NF12479_high_9
Description: NF12479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12479_high_9
NF12479_high_9
[»] scaffold0236 (1 HSPs)
scaffold0236 (23-300)||(20622-20899)


Alignment Details
Target: scaffold0236 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 23 - 300
Target Start/End: Original strand, 20622 - 20899
Alignment:
Q  23 taacaacaaaaacacgcactttcatgcattcttctccctctatttataacaacacttttagttcacttcttcacatcaccttcaagtaacaacagtatca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20622 taacaacaaaaacacgcactttcatgcattcttctccctctatttataacaacacttttagttcatttcttcacatcaccttcaagtaacaacagtatca 20721  T
Q  123 catccatggcatccttcattgcaaaatccatatccatcatttctgacaccgtttcttcactcacttccgatgtgaaggccattttcttcactctctgcac 222  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20722 catccatggcatccttcattgcaaaatccatatccatcatgtctgacaccgtttcttcactcacttccgatgtgaaggccattttcttcactctctgcac 20821  T
Q  223 catgttcctttgccttttcattggcattacaaaccttgcttttcttagcctatttataaccccccttaaactcaacac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20822 catgttcctttgccttttcattggcattacaaaccttgcttttcttagcctatttataaccccccttaaactcaacac 20899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University