View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12479_low_1 (Length: 788)
Name: NF12479_low_1
Description: NF12479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12479_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 291 - 772
Target Start/End: Original strand, 42086780 - 42087260
Alignment:
| Q |
291 |
tatcttaaaatcaacaaagttgcggatactttttaccaaatttaggttgaataggtcggatggccttgagaatttattcgtagttcctaactttgcttct |
390 |
Q |
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| T |
42086780 |
tatcttaaaatcaacaaagttgcggatactttt-accaagtttaggttgaataggtcggatggccttgagaatttattcgtagttcctaactttgcttct |
42086878 |
T |
|
| Q |
391 |
tgtgctatgttagctggtaagagnnnnnnnnnnnnncttatttcttgcgtcttattaggggtaactgataacccttcttattaaccnnnnnnntaccaag |
490 |
Q |
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||||||||||||||| ||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||| |
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| T |
42086879 |
tgtgctatgttagcttgtaagagtttttagttttttcttattgcttgcgtcttattgggggtaaccgataacccttcttattaaccaaaaaaacaccaag |
42086978 |
T |
|
| Q |
491 |
ttcatcttatttaaatgatcatctagagtttaagatgattacatatatgatgtatccacttttgatcattagctcaccaaatttgcaagcttatccaaaa |
590 |
Q |
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||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42086979 |
ttcatcttaattaactgatcttctagagtttaagatgattacatatatgatgtatccacttttgatcattagctcaccaaatttgcaagcatatccaaaa |
42087078 |
T |
|
| Q |
591 |
taaatccaaatgaccaaatccatcaacatttagttttgtttaattaagcttttcttggataaatgattcttgcataaggttttgcagcattttgtttgtc |
690 |
Q |
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| T |
42087079 |
taaatccaaatgaccaaatccatcaacatttggttttgtttaattaagcttttcttggataaatgattcttgcataaggttttgcagcattttgtttgtc |
42087178 |
T |
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| Q |
691 |
aataccatcattcattcctaacnnnnnnnggtcacctaaaatcaaaaccacaaacatataacctagaaagcaaacacaacat |
772 |
Q |
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| T |
42087179 |
aataccatcattcattcctaacaaaaaaaggtcacctaaaatcaaaaccacaaacatataacctagaaagcaaacacaacat |
42087260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 29 - 287
Target Start/End: Original strand, 42085589 - 42085859
Alignment:
| Q |
29 |
cacgcaccatttcgatgtatccttgttcaaattttgattattttttcacttcggatc------------agcgagaaagttgtaatgaagaggtttcgct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42085589 |
cacgcaccatttcgatgtatccttgttcaaattttgattattttttcacttcggatcataaggtcgatcagcgagaaagttgtaatgaagaggtttcgct |
42085688 |
T |
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| Q |
117 |
gaatcttcctttgccggtggtcggaatacagattttcgggttctaaggcctgcaaagaatgaaactttgggctttccttatgggcctgcctgcaagctct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
42085689 |
gaatcttcctttgccggtggtcggaatacagattttcgggttctaaggcctgcagagaatgatactttgggctttccttataggcctgcctgcaagctct |
42085788 |
T |
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| Q |
217 |
tccactttggactaatgaatggaagttgttattcatactccattttaatctgtaatacacctaccctattt |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42085789 |
tccactttggactaatgaatggaagttgttattcatactccattttaatctgtaatacacctaccctattt |
42085859 |
T |
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