View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12479_low_10 (Length: 362)

Name: NF12479_low_10
Description: NF12479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12479_low_10
NF12479_low_10
[»] chr7 (1 HSPs)
chr7 (19-350)||(33110450-33110781)
[»] chr8 (2 HSPs)
chr8 (19-113)||(18551482-18551576)
chr8 (32-171)||(33222048-33222186)
[»] scaffold1416 (1 HSPs)
scaffold1416 (22-64)||(176-218)
[»] chr6 (2 HSPs)
chr6 (22-64)||(6343513-6343555)
chr6 (22-70)||(15514410-15514458)
[»] chr5 (1 HSPs)
chr5 (22-64)||(16989768-16989810)
[»] chr2 (2 HSPs)
chr2 (22-64)||(20482603-20482645)
chr2 (22-64)||(28018542-28018584)
[»] chr1 (1 HSPs)
chr1 (19-113)||(9802725-9802819)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 33110450 - 33110781
Alignment:
Q  19 aataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaactacttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110450 aataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaactacttt 33110549  T
Q  119 aaacctctttatggtttgaaataaggcaagctgcaatggctctccaaattatcctcnnnnnnnctattggattcactcaatcccaatctgattattcatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  33110550 aaacctctttatggtttgaaataaggcaagctgcaatggctctccaaattatcctctttttttctattggattcactcaatcccaatctgattattcatt 33110649  T
Q  219 gttcactnnnnnnnncctctactctttcacaactctattggtatatgttgatgatgttattctcacatgaacatccatttcagatatccactctgttaaa 318  Q
    |||||||        ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110650 gttcactaaaaaaaacctctactctttcacaactctgttggtatatgttgatgatgttattctcacatgaacatccatttcagatatccactctgttaaa 33110749  T
Q  319 cttggtccttacttcttccgctcttcatctca 350  Q
    |||||||||||||||| |||||||||||||||    
T  33110750 cttggtccttacttctcccgctcttcatctca 33110781  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 18551576 - 18551482
Alignment:
Q  19 aataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaact 113  Q
    |||||||||||||||||||| ||  |  | ||| ||||||||||| | |||| ||| |||||| | || ||||||||||||||||||||||||||    
T  18551576 aataatgctttccttcatggtgaattgcaagaaaatgtgtacatgcaacttcctccaggtgttaaatcatccaaaccaaatcaagtttgtaaact 18551482  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 33222048 - 33222186
Alignment:
Q  32 ttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaactactttaaacctctttatg 131  Q
    ||||||||||||||||| | |||||   ||||||||||| |||| |||||   |||| |||||| |||||||||| |||| | | | ||| ||||||| |    
T  33222048 ttcatggagaccttgataaggatgtaagcatgaagcttcctcctagtgtttcatctttcaaacctaatcaagtttctaaattgc-tcaaatctctttagg 33222146  T
Q  132 gtttgaaataaggcaagctgcaatggctctccaaattatc 171  Q
    ||||||| |||| ||| |  |||||| | |||||||||||    
T  33222147 gtttgaagtaagccaaccaccaatggttttccaaattatc 33222186  T

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Target: scaffold1416 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 218 - 176
Alignment:
Q  22 aatgctttccttcatggagaccttgatgaagatgtgtacatga 64  Q
    |||||||||||||||||||| ||| |||||||||| |||||||    
T  218 aatgctttccttcatggagagcttcatgaagatgtttacatga 176  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 6343513 - 6343555
Alignment:
Q  22 aatgctttccttcatggagaccttgatgaagatgtgtacatga 64  Q
    |||||||||||||||||||| ||| |||||||||| |||||||    
T  6343513 aatgctttccttcatggagagcttcatgaagatgtttacatga 6343555  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 15514458 - 15514410
Alignment:
Q  22 aatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttc 70  Q
    ||||||||||| |||||||||||||||||||| || || ||||| ||||    
T  15514458 aatgctttcctacatggagaccttgatgaagaagtatatatgaatcttc 15514410  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 16989810 - 16989768
Alignment:
Q  22 aatgctttccttcatggagaccttgatgaagatgtgtacatga 64  Q
    |||||||||||||||||||| ||| |||||||||| |||||||    
T  16989810 aatgctttccttcatggagagcttcatgaagatgtttacatga 16989768  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 20482645 - 20482603
Alignment:
Q  22 aatgctttccttcatggagaccttgatgaagatgtgtacatga 64  Q
    |||||||||||||||||||| ||| |||||||||| |||||||    
T  20482645 aatgctttccttcatggagagcttcatgaagatgtttacatga 20482603  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 28018542 - 28018584
Alignment:
Q  22 aatgctttccttcatggagaccttgatgaagatgtgtacatga 64  Q
    |||||||||||||||||||| ||| |||||||||| |||||||    
T  28018542 aatgctttccttcatggagagcttcatgaagatgtttacatga 28018584  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 9802819 - 9802725
Alignment:
Q  19 aataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaact 113  Q
    ||||||||||| |||||||| ||| |  | ||| ||||||||||| | |||| ||| |||||| |  | |||||||||||||||||||| |||||    
T  9802819 aataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtaacttcctccaggtgttaaaacatccaaaccaaatcaagtttgcaaact 9802725  T

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