View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12479_low_16 (Length: 252)
Name: NF12479_low_16
Description: NF12479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12479_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 42088071 - 42088303
Alignment:
| Q |
5 |
aaaatatttcaaacgcgttttaagaattttttataggctgtctgtattgttcggattatataacctaaactgcataaaacacacgagaagctcatagagt |
104 |
Q |
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| T |
42088071 |
aaaatatttcaaacgtatttttagaagtttttagggaatgtctgtatcgttcagattatataacctgaactgcataagacacacgagaaactcatagagt |
42088170 |
T |
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| Q |
105 |
tggaaaagaagcactcaagaaattatctttgttagtttacttgttgtaggacatctaatggccctatctatttcatttgtagaaggaactctttacttgt |
204 |
Q |
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| T |
42088171 |
tggaaaagaagcactcaagaaattatctttgttagtttacttgttgtaggacatctaatggccttatctatttcatttgtagaaggaactctttacttgt |
42088270 |
T |
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| Q |
205 |
cacgagttgtcacgttcatgccacacgtctctg |
237 |
Q |
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| T |
42088271 |
cacgagttgtcacgttcatgccacacgtctctg |
42088303 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 13019661 - 13019597
Alignment:
| Q |
53 |
gttcggattatataacctaaactgcataaaacacacgagaagctcatagagttggaaaagaagca |
117 |
Q |
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| T |
13019661 |
gttcggattctataatccaaactgcataggacgcatgagaagttcatagagtgggaaaagaagca |
13019597 |
T |
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