View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12479_low_20 (Length: 204)
Name: NF12479_low_20
Description: NF12479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12479_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 11866144 - 11866004
Alignment:
| Q |
47 |
cataagaggtctagggtgttgtttctcagaaaacaaccacaaacgttgtctctcttccatctctgcctccttaaacctctgtctaaaccctacaaatttc |
146 |
Q |
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| T |
11866144 |
cataagaggtctagggtgttgtttctcagaaaacaaccacaaacgttgtctctcttccatctctgcctccttaaacctctgtctaaaccctacaaatttc |
11866045 |
T |
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| Q |
147 |
tgaactgattttcgcaaccgttccaacgttgaacacggtga |
187 |
Q |
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| T |
11866044 |
tgaactgattttcgcaaccgttccaacgtagaacacggtga |
11866004 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 11191771 - 11191714
Alignment:
| Q |
107 |
ctctgcctccttaaacctctgtctaaaccctacaaatttctgaactgattttcgcaac |
164 |
Q |
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| T |
11191771 |
ctctgcctccttaaacctcactcaaaaccctacaaaattttcaactgattttcgcaac |
11191714 |
T |
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