View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12479_low_3 (Length: 486)

Name: NF12479_low_3
Description: NF12479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12479_low_3
NF12479_low_3
[»] chr1 (9 HSPs)
chr1 (200-470)||(52548945-52549216)
chr1 (52-108)||(52549297-52549353)
chr1 (111-160)||(52549211-52549260)
chr1 (14-108)||(15594823-15594917)
chr1 (327-392)||(34465174-34465239)
chr1 (335-392)||(4677466-4677523)
chr1 (273-318)||(4678136-4678181)
chr1 (35-108)||(4678842-4678915)
chr1 (242-318)||(15595550-15595627)
[»] chr2 (28 HSPs)
chr2 (227-318)||(7542725-7542816)
chr2 (13-108)||(14703196-14703291)
chr2 (111-225)||(7542155-7542264)
chr2 (13-108)||(7542014-7542109)
chr2 (15-108)||(12234479-12234572)
chr2 (238-318)||(11999904-11999984)
chr2 (328-402)||(12235910-12235984)
chr2 (111-192)||(12245564-12245645)
chr2 (233-318)||(12235194-12235279)
chr2 (327-392)||(12244329-12244394)
chr2 (233-318)||(12258159-12258244)
chr2 (235-318)||(16657095-16657178)
chr2 (115-189)||(14703341-14703415)
chr2 (327-393)||(14705574-14705640)
chr2 (111-192)||(11999336-11999417)
chr2 (233-318)||(12244984-12245069)
chr2 (325-406)||(12257826-12257907)
chr2 (242-318)||(43625924-43626000)
chr2 (29-108)||(16662277-16662356)
chr2 (111-192)||(12234618-12234699)
chr2 (238-318)||(14703918-14703998)
chr2 (227-318)||(16661570-16661661)
chr2 (111-192)||(12258739-12258820)
chr2 (111-192)||(16657675-16657756)
chr2 (27-108)||(43625214-43625295)
chr2 (27-108)||(11999209-11999290)
chr2 (27-108)||(12245691-12245772)
chr2 (340-392)||(16656526-16656578)
[»] chr4 (7 HSPs)
chr4 (233-318)||(35132951-35133036)
chr4 (13-108)||(35132244-35132340)
chr4 (14-108)||(30775041-30775135)
chr4 (111-183)||(35132386-35132458)
chr4 (244-318)||(9335469-9335543)
chr4 (244-318)||(30775768-30775842)
chr4 (144-192)||(54396385-54396433)
[»] chr7 (30 HSPs)
chr7 (244-318)||(13333034-13333108)
chr7 (242-318)||(6790026-6790102)
chr7 (13-108)||(17267727-17267822)
chr7 (244-314)||(8585288-8585358)
chr7 (14-108)||(8616470-8616564)
chr7 (27-108)||(6789314-6789395)
chr7 (244-314)||(8629048-8629118)
chr7 (244-318)||(8667935-8668009)
chr7 (244-318)||(10493952-10494026)
chr7 (242-314)||(3147786-3147858)
chr7 (49-108)||(8659187-8659246)
chr7 (13-108)||(27831160-27831255)
chr7 (244-309)||(8671217-8671282)
chr7 (335-399)||(7876753-7876817)
chr7 (13-97)||(8383172-8383256)
chr7 (36-108)||(8585991-8586063)
chr7 (335-399)||(8647820-8647884)
chr7 (24-108)||(17260040-17260124)
chr7 (13-108)||(8576114-8576209)
chr7 (227-318)||(8654949-8655040)
chr7 (233-318)||(1301969-1302054)
chr7 (335-395)||(1302430-1302490)
chr7 (13-93)||(8601762-8601842)
chr7 (242-318)||(17268453-17268529)
chr7 (13-108)||(8545421-8545516)
chr7 (13-108)||(8570099-8570194)
chr7 (335-401)||(8655468-8655534)
chr7 (335-397)||(8668584-8668646)
chr7 (327-356)||(8610775-8610804)
chr7 (242-318)||(17260755-17260831)
[»] chr5 (3 HSPs)
chr5 (242-318)||(28220465-28220541)
chr5 (334-399)||(28221065-28221130)
chr5 (27-108)||(28219720-28219801)
[»] chr8 (3 HSPs)
chr8 (26-108)||(43744617-43744699)
chr8 (14-99)||(12528293-12528378)
chr8 (265-318)||(43745384-43745437)
[»] chr6 (1 HSPs)
chr6 (273-318)||(28911127-28911172)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 200 - 470
Target Start/End: Complemental strand, 52549216 - 52548945
Alignment:
Q  200 cttttgaattcgcactaatgtccactccattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttctt 299  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549216 cttttgaattcccactaatgtccactccattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttctt 52549117  T
Q  300 accaattaacctcttagcacg-accgtattgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtattt 398  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549116 accaattaacctcttagcacgtaccgtattgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtattt 52549017  T
Q  399 tctcttcaaaaaggaaaagaatcactcgagatagagggtctaatgccctaataggtttctccacctcttttc 470  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52549016 tctcttcaaaaaggaaaagaatcactcgagagagagggtctaatgccctaataggtttctccacctcttttc 52548945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 52549353 - 52549297
Alignment:
Q  52 gacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549353 gacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 52549297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 52549260 - 52549211
Alignment:
Q  111 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549260 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttg 52549211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 15594823 - 15594917
Alignment:
Q  14 atcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    ||||| ||| || ||||| | |||||||||||||  ||||||||| ||||| ||||||||||| |||||||||| |||||| || ||||| ||||    
T  15594823 atcatttacactactcttattcatcttagcatcatcaagacaactctcaactatcttcatacaatccttaaaaaagtccatgttgatttcttcaa 15594917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 34465239 - 34465174
Alignment:
Q  327 ttgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttc 392  Q
    ||||||||||||||| ||||||||||| || || || | ||||||||||||||||||| |||||||    
T  34465239 ttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcccacagcacgtccttc 34465174  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 4677523 - 4677466
Alignment:
Q  335 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttc 392  Q
    |||| ||||||||||||||||| ||||| | ||| ||||||||||||||| |||||||    
T  4677523 gccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttc 4677466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 4678181 - 4678136
Alignment:
Q  273 ttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    ||||||||||| ||||||| || || ||||||||||||||||||||    
T  4678181 ttgaacaacagaatcactatacctcctaccaattaacctcttagca 4678136  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 4678915 - 4678842
Alignment:
Q  35 catcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    |||||| | |||| |||||||||| | |||| | | ||||||||| || |||||||||||||| ||||||||||    
T  4678915 catctttgaatcactaagacaactcttaacagtttccatacactcgttgaaaaggtccatattaatttcctcaa 4678842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 15595550 - 15595627
Alignment:
Q  242 tgaccttgaatgaccataacaatatatcatcttgaacaa-caggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||||||||| ||| |||  |||||||| |||||||| ||| ||||||||||||| |||  ||||| |||||||||    
T  15595550 tgaccttgaatggccacaactttatatcattttgaacaaacagaatcactaaacttcctactgattaatctcttagca 15595627  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 227 - 318
Target Start/End: Original strand, 7542725 - 7542816
Alignment:
Q  227 cattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||| ||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7542725 cattgtcacccgcagtcaccttgaatggccataacagtatatcatcttgaacaacaggatcactaaacttcctaccaattaacctcttagca 7542816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 14703196 - 14703291
Alignment:
Q  13 catcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    |||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  14703196 catcatctactctactcttgtccatcttagcatcaataagacaactctcaacaatcttcacacactcattaaaaaagtccatattcatttcttcaa 14703291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 7542155 - 7542264
Alignment:
Q  111 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaactcaaggcttttgaattc 210  Q
    |||||||||| ||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||     ||||||||||||| ||||    
T  7542155 aagaatctacctcaatagtggcaacaacaaggaaagaaagtgatctttttgccctctcacaagcagttctcaacctc-----ctcaaggcttttggattc 7542249  T
Q  211 gcactaatgtccact 225  Q
     ||||||||||||||    
T  7542250 ccactaatgtccact 7542264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 7542014 - 7542109
Alignment:
Q  13 catcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    ||||||||| | ||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||| |||||||| ||||||||||| |||||||    
T  7542014 catcatctatcatgctcttgtccatattagcatcaataagacagcttccaacaatcgtcatacactcgttaaaaagatccatattcatctcctcaa 7542109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 12234479 - 12234572
Alignment:
Q  15 tcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    ||||| ||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||||  ||| ||| |||||||||||||||||||    
T  12234479 tcatccaccctacttttgtccatcttagcatcactaagacaactctcaacaatcttcatacactcaataagaagatccatattcatttcctcaa 12234572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 11999904 - 11999984
Alignment:
Q  238 gcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  11999904 gcagtgaccttgaatggccataacaatccatcatcttgaacaacaagatcactaaacttccaaccaattaacctcttagca 11999984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 12235910 - 12235984
Alignment:
Q  328 tgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtattttctc 402  Q
    |||||||||||||| |||||||||||||| || |||| ||||||||| |||||||||||||||||| ||||||||    
T  12235910 tgttcctgccatactgcaacacatgaatatgttgtaccaaggtctatccccacagcaagtccttcgcattttctc 12235984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 12245645 - 12245564
Alignment:
Q  111 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 192  Q
    |||||||||| |||||||| || |||||||  || |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  12245645 aagaatctacctcaatagttgcaacaacaagaaacgaaagtattctttttgccctctcacaagcagttctcaatctcctcaa 12245564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 12235194 - 12235279
Alignment:
Q  233 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||| |||| ||||||||||| ||| ||||  | |||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  12235194 caccagcagcgaccttgaatggccacaacatcacatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagca 12235279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 12244394 - 12244329
Alignment:
Q  327 ttgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttc 392  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||| |||||||    
T  12244394 ttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcccacggcacgtccttc 12244329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 12258244 - 12258159
Alignment:
Q  233 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||| |||||||| || |||| ||| |||| ||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||    
T  12258244 caccagcagtgactttaaatggccacaacattatatcatcttgaactacttgatcactaaacttcctaccaattaacctcttagca 12258159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 16657178 - 16657095
Alignment:
Q  235 ccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||| |||||||||||| ||| || |  ||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||    
T  16657178 ccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagca 16657095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 14703341 - 14703415
Alignment:
Q  115 atctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcct 189  Q
    |||||| |||||||||||||||||   |||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  14703341 atctacctcaatagtggcgacaacttggaaagaaagtgttctttttgccctctcgcaagcggttctcaagctcct 14703415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 393
Target Start/End: Original strand, 14705574 - 14705640
Alignment:
Q  327 ttgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcg 393  Q
    ||||||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||  |||||||    
T  14705574 ttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcccacagcacatccttcg 14705640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 11999336 - 11999417
Alignment:
Q  111 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 192  Q
    |||||||||| |||||||| || |||||||  || || ||| ||||||| ||||||||||||||||||||||| ||||||||    
T  11999336 aagaatctacctcaatagttgcaacaacaagaaatgatagtattctttttgccctctcacaagcagttctcaacctcctcaa 11999417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 12245069 - 12244984
Alignment:
Q  233 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||| |||||||||||||| | |||||| |||  ||||||  |||||| |||||||||||||||| |||||||||| |||||||||    
T  12245069 caccagcagtgaccttgaacggccataataatgcatcatccagaacaataggatcactaaacttcctaccaattaatctcttagca 12244984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 12257907 - 12257826
Alignment:
Q  325 tattgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtattttctcttca 406  Q
    |||||||||||||| |||||||| ||||||||||| || | |||||| ||||| |  |||||||||||||||||||| ||||    
T  12257907 tattgttcctgccaaacagcaacgcatgaatacgttgtgccaaggtcaattcctatcgcaagtccttcgtattttcttttca 12257826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 43625924 - 43626000
Alignment:
Q  242 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    ||||| |||||| ||| ||||  ||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||    
T  43625924 tgaccctgaatggccacaacatgatatcattttgaacaacagaatcactaaacttcctaccgattaacctcttagca 43626000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 16662356 - 16662277
Alignment:
Q  29 cttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    |||||||||||| | ||| | || |||||| |||||||||||||||||||| ||||||||| ||||||| ||||| ||||    
T  16662356 cttgtccatctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggcccatattgatttcttcaa 16662277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 12234618 - 12234699
Alignment:
Q  111 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 192  Q
    |||||||||| ||||| || || ||||||| |||||| | || |||||| |||||||||||||||||||| || ||||||||    
T  12234618 aagaatctacctcaatggttgcaacaacaaggaaagacaatgatctttttgccctctcacaagcagttcttaacctcctcaa 12234699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 14703918 - 14703998
Alignment:
Q  238 gcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    ||||||||||| |||| |||||| | ||||||||||||||||| |||||| ||||||||| | || |  ||||||||||||    
T  14703918 gcagtgaccttaaatggccataaaagtatatcatcttgaacaataggatcgctaaacttccttcccaacaacctcttagca 14703998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 318
Target Start/End: Complemental strand, 16661661 - 16661570
Alignment:
Q  227 cattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    ||||| |||| ||| | |||||||| | ||| |||| |||||| | ||||||||| || |||||||| ||| ||||||||||||||||||||    
T  16661661 cattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaacctcttagca 16661570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 12258820 - 12258739
Alignment:
Q  111 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 192  Q
    |||||||||  |||||||| || |||||||   ||||||||| |||||| || ||||||||||| ||| |||||||||||||    
T  12258820 aagaatctatctcaatagttgcaacaacaagataagaaagtgatctttttgcactctcacaagctgttttcaatctcctcaa 12258739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 16657756 - 16657675
Alignment:
Q  111 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 192  Q
    |||||||||| |||| ||||| ||||| | | ||||| ||||| || || ||||||||||| ||||||||||| ||||||||    
T  16657756 aagaatctacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaa 16657675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 43625214 - 43625295
Alignment:
Q  27 ctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    |||||||||| ||| ||||||||||||||||| | |||| | |||| |||||| || ||||| |||||||| ||||| ||||    
T  43625214 ctcttgtccaacttggcatcaataagacaactcttaacagttttcaaacactcgttgaaaagatccatatttatttcatcaa 43625295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 11999209 - 11999290
Alignment:
Q  27 ctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    |||||||||||||| ||||| |||| |||||| |||||| |||| ||||| || |||| ||| || | ||||| ||||||||    
T  11999209 ctcttgtccatctttgcatccataatacaactctcaacagtctttatacaatcattaagaagatctaaattcaattcctcaa 11999290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 12245772 - 12245691
Alignment:
Q  27 ctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    |||||||||||||| ||||| |||| |||||| |||||| |||| ||||| || |||| ||| || | ||||| ||||||||    
T  12245772 ctcttgtccatctttgcatccataatacaactctcaacagtctttatacaatcattaagaagatctaaattcaattcctcaa 12245691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 16656578 - 16656526
Alignment:
Q  340 acagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttc 392  Q
    ||||||||||||||||| || || | ||||||||||||||| ||| |||||||    
T  16656578 acagcaacacatgaataagttgttccaaggtctattcccactgcacgtccttc 16656526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 35132951 - 35133036
Alignment:
Q  233 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    ||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  35132951 caccggcagtgaccttgaatggccatagcagtatatcatcttgaacaataggatcactaaacttcctaccaattaaccttttagca 35133036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 35132244 - 35132340
Alignment:
Q  13 catcatctaccct-gctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||| || ||  | ||||||||||| |||||||||||   ||||||||||||||    
T  35132244 catcatctacccttgctcttgtccatcttagcatcaatgagacaactctctacggtattcatacactcattaaaaaggtctgcattcatttcctcaa 35132340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 30775041 - 30775135
Alignment:
Q  14 atcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    ||||||||| || |||||||| | ||| | |||| |||||||||| |||||| |||  |||||||| ||||||||||||||||| ||||||||||    
T  30775041 atcatctacactactcttgtctacctttgaatcagtaagacaactctcaacagtctgtatacactcattaaaaaggtccatattgatttcctcaa 30775135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 35132386 - 35132458
Alignment:
Q  111 aagaatctacttcaatagtggcgacaacaacgaaagaaagtgttcttttggccctctcacaagcagttctcaa 183  Q
    ||||||||||||||||| |||| ||||||| ||||||||||| ||| || |||||||  || |||||||||||    
T  35132386 aagaatctacttcaatattggcaacaacaaggaaagaaagtgatctctttgccctctagcaggcagttctcaa 35132458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 9335543 - 9335469
Alignment:
Q  244 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||||||| ||| |||||||||||   |||||||||  |||||||||||||| ||||| |||| |||||||||    
T  9335543 accttgaatggccacaacaatatatctctttgaacaaccagatcactaaacttcctaccagttaatctcttagca 9335469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 30775768 - 30775842
Alignment:
Q  244 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||||||| ||| ||||| ||||| | |||||||||||| || ||||| ||| ||||||||||||| ||||||    
T  30775768 accttgaatggccacaacaaaatatctttttgaacaacagggtcgctaaatttcctaccaattaaccttttagca 30775842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 54396385 - 54396433
Alignment:
Q  144 aagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 192  Q
    ||||||||||||| || || ||||||||||| ||||| |||||||||||    
T  54396385 aagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaa 54396433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 13333108 - 13333034
Alignment:
Q  244 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||||||| ||| |||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  13333108 accttgaatggccacaacattatatcattttgaacaaccggatcactaaacttcctaccaattaacctcttagca 13333034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 6790026 - 6790102
Alignment:
Q  242 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||||||||| ||| ||||  ||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  6790026 tgaccttgaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaattaacctcttagca 6790102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 17267727 - 17267822
Alignment:
Q  13 catcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    ||||||| || ||||||||||| |||||||||||| |||||||  | |||||||||| ||| ||||| | ||||||||||||||| ||||||||||    
T  17267727 catcatcaactctgctcttgtcaatcttagcatcactaagacacttctcaacaatctccatgcactcatcaaaaaggtccatattgatttcctcaa 17267822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 8585358 - 8585288
Alignment:
Q  244 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctctt 314  Q
    |||||||||| ||| |||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  8585358 accttgaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaattaacctctt 8585288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 8616470 - 8616564
Alignment:
Q  14 atcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    ||||||||| || ||||| || ||||||| |||| ||| |||||| |||||| |||| |||||||| ||||||||||||||||| ||||||||||    
T  8616470 atcatctacactactcttctctatcttagaatcattaaaacaactctcaacagtctttatacactcgttaaaaaggtccatattgatttcctcaa 8616564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 6789314 - 6789395
Alignment:
Q  27 ctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    ||||||||||||||||| |||| ||||||||| |||||  ||||||||||||| |||||||  |||||||| ||||||||||    
T  6789314 ctcttgtccatcttagcgtcaacaagacaactctcaacggtcttcatacactcattaaaaatatccatattgatttcctcaa 6789395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 8629048 - 8629118
Alignment:
Q  244 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctctt 314  Q
    |||||||||| ||| ||||  ||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  8629048 accttgaatggccagaacatgatatccttttgaacaacaggatcactaaacttcctaccaattaacctctt 8629118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 8667935 - 8668009
Alignment:
Q  244 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||||||| ||| |||||||||||   ||||||||| || |||||||||||| ||||||||||||||||||||    
T  8667935 accttgaatggccacaacaatatatctctttgaacaacggggtcactaaacttcctaccaattaacctcttagca 8668009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 10494026 - 10493952
Alignment:
Q  244 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||||||| ||| |||| |||||| | ||||||||| ||||||||||||||| | ||||||||||||||||||    
T  10494026 accttgaatggccacaacattatatcgttttgaacaaccggatcactaaacttcctgccaattaacctcttagca 10493952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 3147786 - 3147858
Alignment:
Q  242 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctctt 314  Q
    |||||||||||| ||| ||||  ||||||| ||||||||||| ||||| ||||||| ||||||||||||||||    
T  3147786 tgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctctt 3147858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 8659187 - 8659246
Alignment:
Q  49 taagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    |||||||||| |||||| | ||||||||||| |||||||| |||||||||||||||||||    
T  8659187 taagacaactctcaacagttttcatacactcattaaaaagatccatattcatttcctcaa 8659246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 27831255 - 27831160
Alignment:
Q  13 catcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    |||||||||  || ||||||||||||||||  ||| | |||||||| |||||| ||| |||||| || || |||||||||||||| ||||||||||    
T  27831255 catcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaa 27831160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 8671282 - 8671217
Alignment:
Q  244 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaac 309  Q
    |||||||||| ||| |||||||||||   ||||||||| ||||||||||||||| |||||||||||    
T  8671282 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaac 8671217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 7876817 - 7876753
Alignment:
Q  335 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtatttt 399  Q
    |||| ||||||||||| |||||||| || | ||||||||||||||| ||| ||||||||||||||    
T  7876817 gccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttcgtatttt 7876753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 8383256 - 8383172
Alignment:
Q  13 catcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatatt 97  Q
    |||||||||| || ||||||| ||||||||||||| ||||||| || |||||| ||| ||||||||  | ||| |||||||||||    
T  8383256 catcatctacactactcttgttcatcttagcatcagtaagacagctctcaacagtctccatacacttttcaaataggtccatatt 8383172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 8586063 - 8585991
Alignment:
Q  36 atcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    ||||||| |||  |||||||||| |||||| | || |||||||| ||||||||||||||||| ||||||||||    
T  8586063 atcttagaatcggtaagacaactctcaacagtatttatacactcattaaaaaggtccatattgatttcctcaa 8585991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 8647820 - 8647884
Alignment:
Q  335 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtatttt 399  Q
    |||| ||||||||||| |||||||| || | ||||||||||||||| ||||||||||||| ||||    
T  8647820 gccacacagcaacacacgaatacgttgttccaaggtctattcccactgcaagtccttcgtgtttt 8647884  T

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Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 17260040 - 17260124
Alignment:
Q  24 ctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    ||||||||||| |||||| ||||| |||||||  | |||||||||| ||| ||||| | ||||||||||||||| ||||| ||||    
T  17260040 ctgctcttgtcaatcttaccatcactaagacacttctcaacaatctccatgcactcataaaaaaggtccatattgatttcttcaa 17260124  T

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Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 8576114 - 8576209
Alignment:
Q  13 catcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    |||||||||| ||  ||||||||||||||||||||  ||||||| | | |||| | ||||||||||  | ||| |||| |||||||||||||||||    
T  8576114 catcatctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattcatttcctcaa 8576209  T

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Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 318
Target Start/End: Original strand, 8654949 - 8655040
Alignment:
Q  227 cattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    ||||| |||| | ||| ||| |||||| ||| ||||  ||||| | |||||||| |||||||||| ||||| ||||||||||||||||||||    
T  8654949 cattaacaccagaagtaaccatgaatggccacaacatgatatccttttgaacaataggatcactatacttcctaccaattaacctcttagca 8655040  T

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Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 1301969 - 1302054
Alignment:
Q  233 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||||  |||||||||||| ||| ||||  || || | ||||||||| | ||||||||||||| |||||||||| |||||||||    
T  1301969 caccggcgatgaccttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctcttagca 1302054  T

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Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 1302430 - 1302490
Alignment:
Q  335 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgta 395  Q
    |||| ||||||||||| ||||| ||||| | |||||||||||| |||||| ||||||||||    
T  1302430 gccacacagcaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgta 1302490  T

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Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 8601762 - 8601842
Alignment:
Q  13 catcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtcca 93  Q
    ||||||| || || ||||| || |||| ||||||| ||||||||||||||||| |||  ||||||| |||||| |||||||    
T  8601762 catcatccacactactcttttcgatctgagcatcactaagacaactttcaacagtctctatacacttcttaaagaggtcca 8601842  T

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Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 17268453 - 17268529
Alignment:
Q  242 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||||||||| |||  ||| |||||| | ||| || |||||||||||||||||| |||||||||  |||||||||    
T  17268453 tgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagca 17268529  T

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Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 8545421 - 8545516
Alignment:
Q  13 catcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    |||||||||| || | |||||||||||||||||||| ||||||||  | |||| | | ||||||||  | ||| ||||||||||||| || |||||    
T  8545421 catcatctacactacccttgtccatcttagcatcaacaagacaacaattaacagtgtccatacacttttcaaagaggtccatattcaattgctcaa 8545516  T

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Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 8570099 - 8570194
Alignment:
Q  13 catcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    |||||||||| ||  |||| |||||||||||||||  ||||||||| | |||| | | ||||||||  | ||| |||| |||||||||||||||||    
T  8570099 catcatctacactattcttttccatcttagcatcagcaagacaactattaacagtttccatacacttttcaaagaggttcatattcatttcctcaa 8570194  T

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Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 401
Target Start/End: Original strand, 8655468 - 8655534
Alignment:
Q  335 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtattttct 401  Q
    |||| ||||||||||||||||| || || |  ||||||||||| |||||| |||| |||||||||||    
T  8655468 gccacacagcaacacatgaataggttgttccgaggtctattccgacagcacgtccctcgtattttct 8655534  T

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Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 397
Target Start/End: Original strand, 8668584 - 8668646
Alignment:
Q  335 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtatt 397  Q
    |||| ||||||||||||||||| || || | ||| ||||||||||| ||| ||||||||||||    
T  8668584 gccacacagcaacacatgaataggttgttccaagatctattcccactgcacgtccttcgtatt 8668646  T

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Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 356
Target Start/End: Original strand, 8610775 - 8610804
Alignment:
Q  327 ttgttcctgccatacagcaacacatgaata 356  Q
    ||||||||||||||||||||||||||||||    
T  8610775 ttgttcctgccatacagcaacacatgaata 8610804  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 17260755 - 17260831
Alignment:
Q  242 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||||||||| |||  ||| |||||| | ||| || |||||||||||||||||| |||||| ||  |||||||||    
T  17260755 tgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaactagtctcttagca 17260831  T

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Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 28220465 - 28220541
Alignment:
Q  242 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    |||||||||||| ||| |||  ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  28220465 tgaccttgaatggccacaactttatatcatcttgaacaacagagtcactaaacttcctaccaattaacctcttagca 28220541  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 28221065 - 28221130
Alignment:
Q  334 tgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtatttt 399  Q
    ||||| |||||||||||||||||||| || | ||| |||||||||||||||  ||||| |||||||    
T  28221065 tgccacacagcaacacatgaatacgttgttccaagatctattcccacagcacatccttggtatttt 28221130  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 28219720 - 28219801
Alignment:
Q  27 ctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    ||||||||||| || |||||| | ||||| || |||||| | |||| |||||| || ||||| |||||||| ||||||||||    
T  28219720 ctcttgtccatattggcatcagtgagacacctctcaacagttttcaaacactcattgaaaagatccatattgatttcctcaa 28219801  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 43744617 - 43744699
Alignment:
Q  26 gctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaa 108  Q
    ||||||||||||||| |||||| |||||||||| |||||||| |||| |||||| || || || |||||||| ||||||||||    
T  43744617 gctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaa 43744699  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 12528293 - 12528378
Alignment:
Q  14 atcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattca 99  Q
    ||||||||| || ||||||||||||||||||||  | | ||||||||||||  ||| ||||||||  | ||| |||||||||||||    
T  12528293 atcatctacactactcttgtccatcttagcatcggtcaaacaactttcaacggtctccatacacttttcaaagaggtccatattca 12528378  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 43745384 - 43745437
Alignment:
Q  265 atatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    ||||||| ||||||| ||| |||| |||||||| ||||||||||||||||||||    
T  43745384 atatcattttgaacatcagaatcattaaacttcctaccaattaacctcttagca 43745437  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 28911127 - 28911172
Alignment:
Q  273 ttgaacaacaggatcactaaacttcttaccaattaacctcttagca 318  Q
    ||||||||| ||||||||||||||| || |||||| ||||||||||    
T  28911127 ttgaacaacgggatcactaaacttcctatcaattatcctcttagca 28911172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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