View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12479_low_4 (Length: 472)
Name: NF12479_low_4
Description: NF12479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12479_low_4 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 15 - 453
Target Start/End: Original strand, 142800 - 143238
Alignment:
| Q |
15 |
cacagaggggtgttattagttgaaaataatggttgcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaaatactttgaagattatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
142800 |
cacagaggggtgttattagttgaaaataatggttgcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaaatactttgaagattatt |
142899 |
T |
|
| Q |
115 |
atcctcaaaagttaataagtcaaaaattggagttgactcaaaattgcaaatcttgcaaccatttcactgatttgattagatatacttatcttccaagaga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
142900 |
atcctcaaaagttaataagtcaaaaattggagttgactcaaaattgcaaatcttgcaaccatttcactgatttgattagatatacttatcttccaagaga |
142999 |
T |
|
| Q |
215 |
aattcaagtaaagggtgtgaatccatcaaaaagtttcgcaccttttagatcggaatatgtactaagaacagctacaaagttgagtgaagcaggtattagt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
143000 |
aattcaagtaaagggtgtgaatccatcaaaaagtttcgcaccttttagatcggaatatgtactaagaacagctacaaagttgagtgaagctggtattagt |
143099 |
T |
|
| Q |
315 |
ttcgagaaacttcaaggtagaagctattgtgacttaaagtttaagaagacaccaattttgagctggtttttgtgcttaggttgtgtaccatgttttaaat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143100 |
ttcgagaaacttcaaggtagaagctattgtgacttaaagtttaagaagacaccaattttgagctggtttttgtgcttaggttgtgtaccatgttttaaat |
143199 |
T |
|
| Q |
415 |
ttgtggaatctaagttacaaatcccgcatttgaatgtag |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143200 |
ttgtggaatctaagttacaaatcccgcatttgaatgtag |
143238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 25 - 453
Target Start/End: Original strand, 298196 - 298622
Alignment:
| Q |
25 |
tgttattagttgaaaataatggttgcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaaatactttgaagattattatcctcaaaa |
124 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
298196 |
tgttattaggtgaaaagaatggtttcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaactactttgaagtttattatcctcaaaa |
298295 |
T |
|
| Q |
125 |
gttaataagtcaaaaattggagttgactcaaaattgcaaatcttgcaaccatttcactgatttgattagatatacttatcttccaagagaaattcaagta |
224 |
Q |
| |
|
||||| || |||| ||||||||||||| |||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
298296 |
gttaa---gtaaaaacttggagttgactccaaattgcaaatcttgcaaacacttcattgatttgattagatatacttatcttccaagagaaattcaagtt |
298392 |
T |
|
| Q |
225 |
aagggtgtgaatccatcaaaaagtttcgcaccttttagatcggaatat-gtactaagaacagctacaaagttgagtgaagcaggtattagtttcgagaaa |
323 |
Q |
| |
|
|| ||| ||| ||||||| ||||| || |||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
298393 |
aatggtatgagtccatcacaaagtatcacacctttttgatcagaatattgtactaagaacagctacaaagttgagggaagcaggtattagctttgagaaa |
298492 |
T |
|
| Q |
324 |
cttcaaggtagaagctattgtgacttaaagtttaagaagacaccaattttgagctggtttttgtgcttaggttgtgtaccatgttttaaatttgtggaat |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
298493 |
gttcaaggtagaagctattgtgacttaaagtttaagaagacatcaattttgagatgggttttgtgctgaggttgtgtaccatgttttcaatttgtcgaat |
298592 |
T |
|
| Q |
424 |
ctaagttacaaatcccgcatttgaatgtag |
453 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |
|
|
| T |
298593 |
ctaagttacatatcccgcatttgaaagtag |
298622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 332
Target Start/End: Complemental strand, 45960869 - 45960562
Alignment:
| Q |
22 |
gggtgttattagttgaaaataatggttgcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaaatactttgaagattattatcctca |
121 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45960869 |
gggtgttattaggtgaaaagaatggttgcaatagcaataaggaaaattgccttagttttattgatcttgcttttaactactttgaagattattatcctca |
45960770 |
T |
|
| Q |
122 |
aaagttaataagtcaaaaattggagttgactcaaaattgcaaatcttgcaaccatttcactgatttgattagatatacttatcttccaagagaaattcaa |
221 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45960769 |
aaagttaa---gtaaaaaattggagttgactcaaaattgcaaatcttgcaaacacttcgctgatttgattagatatacttatcttccaagagaaattcaa |
45960673 |
T |
|
| Q |
222 |
gtaaagggtgtgaatccatcaaaaagtttcgcaccttttagatcggaatatgtactaagaacagctacaaagttgagtgaagcaggtattagtttcgaga |
321 |
Q |
| |
|
|| || ||| ||||||||||| |||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| || |||| |
|
|
| T |
45960672 |
gttaatggtatgaatccatcacaaagtttcacaccttttagatcagaatatgcactaagaacagctacaaagttgagtgaagcagatattagatttgaga |
45960573 |
T |
|
| Q |
322 |
aacttcaaggt |
332 |
Q |
| |
|
|| |||||||| |
|
|
| T |
45960572 |
aagttcaaggt |
45960562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 328 - 453
Target Start/End: Complemental strand, 45958549 - 45958424
Alignment:
| Q |
328 |
aaggtagaagctattgtgacttaaagtttaagaagacaccaattttgagctggtttttgtgcttaggttgtgtaccatgttttaaatttgtggaatctaa |
427 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
45958549 |
aaggtagatgctattgtgacttaaagtttaagaagacaccaattttgagctggtttttgtgcttaggttgtgtaccaggttttaaatttgttgaatctac |
45958450 |
T |
|
| Q |
428 |
gttacaaatcccgcatttgaatgtag |
453 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
45958449 |
gttacaaatcccgcatttgaaagtag |
45958424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 405
Target Start/End: Original strand, 25539350 - 25539486
Alignment:
| Q |
269 |
atatgtactaagaacagctacaaagttgagtgaagcaggtattagtttcgagaaacttcaaggtagaagctattgtgacttaaagtttaagaagacacca |
368 |
Q |
| |
|
||||||||||| ||| || |||||||||| |||||| | |||||| || |||||| | |||||| |||||||| || |||||||||| || || ||| |
|
|
| T |
25539350 |
atatgtactaaaaactgcaacaaagttgaatgaagcggatattagctttgagaaagtataaggtaaaagctatttggaaataaagtttaacaaaacccca |
25539449 |
T |
|
| Q |
369 |
attttgagctggtttttgtgcttaggttgtgtaccat |
405 |
Q |
| |
|
||| | | ||||||||||||| |||||||| |||||| |
|
|
| T |
25539450 |
attctcaactggtttttgtgcctaggttgtttaccat |
25539486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University