View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12479_low_9 (Length: 378)
Name: NF12479_low_9
Description: NF12479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12479_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 7384486 - 7384143
Alignment:
| Q |
17 |
gtgctatcctacaacatagtaagtgatatgaacctgaattcaagagataaaaaacatatattattggttaaaaatagaaaacagtacggaagaaaaacct |
116 |
Q |
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| T |
7384486 |
gtgctaccctacaacatagtaagtgatatgaacctgaattcaagagataaaaaacatatattattggttaaaaatagaaaacagtatggaagaaaaacct |
7384387 |
T |
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| Q |
117 |
tgtaatcctaaagcaaaaacttcttcatagtgctaagtgctaacaatgtatctttgtattcatagttcttaagtctaattttttgaataatctcaagcaa |
216 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7384386 |
tgtaatcctaaagcaaaaacttcttcacagtgctaagtgctaacaatgtatctctgcattcatagttcttaagtctaattttttgaatagtctcaagcaa |
7384287 |
T |
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| Q |
217 |
tggctgaatggcgttatttatgatactaataactgcacttttacggaccctccaaatcatgggtctagtaactgcatcaaaagttaccctatcaataagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7384286 |
tggctgaatggcgttatttatgatactaataactgcacttttacggaccctccaaatcataggtctagtaactgcatcaaaagttaccctatcaataagt |
7384187 |
T |
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| Q |
317 |
agaaacaagaatagttaagccttatcctactaaataagatgaga |
360 |
Q |
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||||||||||||||||||| ||||||| ||||||||||| |||| |
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| T |
7384186 |
agaaacaagaatagttaagtcttatcccactaaataagacgaga |
7384143 |
T |
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