View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_high_12 (Length: 471)
Name: NF1247_high_12
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 66 - 313
Target Start/End: Original strand, 13717436 - 13717694
Alignment:
| Q |
66 |
aatgaagaggattcgaactcgagatagaatgatttgatgtgttacccctaatttaagtgatattaagacgtaaagcacattatagctgatgacctaatta |
165 |
Q |
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| T |
13717436 |
aatggagaggattcgaactcgagatagattgatctgatgtgttacccctaatttaagtgatattaagacgtaaagcacattatagctgatgacctaatta |
13717535 |
T |
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| Q |
166 |
cacacaaatacgtcaa---------ctcacctttacgtaggagagtttgagccacatgatgaggcacacatgtaccttttcatttatc-tat--tacact |
253 |
Q |
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| T |
13717536 |
cacacaaatacgtcaaccaggcagtctcacctttacgtaggagagtttgagccacataatgaggcacacatataccttttcatttgtcttattatatact |
13717635 |
T |
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| Q |
254 |
ttatatatagtactcgtattaacctacgatttcgatttttaaggaaacagatatatacta |
313 |
Q |
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| T |
13717636 |
ttatatatagta-tgctattaacctacgatttcgatttttaaggaaacagatatatacta |
13717694 |
T |
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