View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_high_24 (Length: 341)
Name: NF1247_high_24
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 39 - 329
Target Start/End: Original strand, 30292329 - 30292619
Alignment:
| Q |
39 |
aaaaggactgtaccagatggagctatttggccttaccttcacaaagataacctcgatgatggatgtgactcatgcccctattgtattgtccttccatgcc |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292329 |
aaaaggactgtaccagatggagctatttggccttaccttcacaaagataacctcgatgatggatgtgactcatgcccctattgtattgtccttccatgcc |
30292428 |
T |
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| Q |
139 |
ttgtcaagctacaacaggttaagtgagatcttttaagtttctttacctctctttttgaatatagtgtcattgcaaaacatctttaagagctaatttgttt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292429 |
ttgtcaagctacaacaggttaagtgagatcttttaagtttctttacctctctttttgaatatagtgtcattgcaaaacatctttaagagctaatttgttt |
30292528 |
T |
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| Q |
239 |
atagcactggacatctattgtaggcttgtagctttattcattagtacgagtttctatcttgtaattgtaggaaactatttattatgattca |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292529 |
atagcactggacatctattgtaggcttgtagctttattcattagtacgagtttctatcttgtaattgtaggaaactatttattatgattca |
30292619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 39 - 329
Target Start/End: Original strand, 30321230 - 30321520
Alignment:
| Q |
39 |
aaaaggactgtaccagatggagctatttggccttaccttcacaaagataacctcgatgatggatgtgactcatgcccctattgtattgtccttccatgcc |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30321230 |
aaaaggactgtaccagatggagctatttggccttaccttcacaaagataacctcgatgatggatgtgactcatgcccctattgtattgtccttccatgcc |
30321329 |
T |
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| Q |
139 |
ttgtcaagctacaacaggttaagtgagatcttttaagtttctttacctctctttttgaatatagtgtcattgcaaaacatctttaagagctaatttgttt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30321330 |
ttgtcaagctacaacaggttaagtgagatcttttaagtttctttacctctctttttgaatatagtgtcattgcaaaacatctttaagagctaatttgttt |
30321429 |
T |
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| Q |
239 |
atagcactggacatctattgtaggcttgtagctttattcattagtacgagtttctatcttgtaattgtaggaaactatttattatgattca |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30321430 |
atagcactggacatctattgtaggcttgtagctttattcattagtacgagtttctatcttgtaattgtaggaaactatttattatgattca |
30321520 |
T |
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