View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_high_30 (Length: 308)
Name: NF1247_high_30
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 7019880 - 7020010
Alignment:
| Q |
29 |
agatagatcaacccaagtctaaagatataaagattctgttccttgtaactttattttgctgtctctttcatttcattaaattgaaagtgaattaactaag |
128 |
Q |
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| T |
7019880 |
agatagatcaacccaagtctaaagatataaagattctgttccttgtaactttattttgctgtctctttcatttcattaaattgaaagtgaattaactaag |
7019979 |
T |
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| Q |
129 |
ctcattaatttacaacattttatgtgtataa |
159 |
Q |
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| T |
7019980 |
ctcattaatttacaacattttatgtgtataa |
7020010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 7020296 - 7020423
Alignment:
| Q |
169 |
aatagtttcatttgttttaatagttttatgatcaaaagaatataggaacatcaaatgtgacaaatctagctaatacaagtgtacaaaaaccatgatcatt |
268 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7020296 |
aatagtttcatttgttttaatagttttatgatcaaaacaatataggaacatcaaatgtgacaaatctagctaatacaagtgtacaaaaaccatgatcatt |
7020395 |
T |
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| Q |
269 |
ggtacggactaataaatattgtcagaat |
296 |
Q |
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| T |
7020396 |
ggtacggactaataaatattgtcagaat |
7020423 |
T |
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