View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1247_high_33 (Length: 304)

Name: NF1247_high_33
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1247_high_33
NF1247_high_33
[»] chr6 (15 HSPs)
chr6 (72-241)||(4190703-4190871)
chr6 (241-304)||(12196042-12196105)
chr6 (242-304)||(26933096-26933158)
chr6 (241-304)||(5275866-5275929)
chr6 (242-304)||(30035134-30035196)
chr6 (242-304)||(30966923-30966985)
chr6 (237-304)||(19705103-19705170)
chr6 (242-304)||(2629417-2629479)
chr6 (234-304)||(22858474-22858544)
chr6 (244-304)||(20526548-20526608)
chr6 (242-304)||(18317751-18317813)
chr6 (244-300)||(17011781-17011837)
chr6 (250-304)||(17852275-17852330)
chr6 (264-304)||(30443036-30443076)
chr6 (264-304)||(30445243-30445283)
[»] chr1 (25 HSPs)
chr1 (75-241)||(52210241-52210406)
chr1 (239-304)||(4131820-4131885)
chr1 (241-304)||(46432574-46432637)
chr1 (242-304)||(9459951-9460013)
chr1 (242-304)||(9463778-9463840)
chr1 (242-304)||(17325165-17325227)
chr1 (242-304)||(24325347-24325409)
chr1 (242-304)||(39931762-39931824)
chr1 (242-304)||(47905956-47906018)
chr1 (242-304)||(48664852-48664914)
chr1 (242-304)||(28998782-28998844)
chr1 (242-304)||(29004498-29004560)
chr1 (242-304)||(31736053-31736115)
chr1 (240-304)||(45693962-45694026)
chr1 (242-304)||(6115655-6115718)
chr1 (242-304)||(6997214-6997276)
chr1 (242-304)||(15295377-15295439)
chr1 (242-304)||(27339668-27339730)
chr1 (242-304)||(2949753-2949815)
chr1 (242-304)||(27337470-27337532)
chr1 (252-304)||(13785783-13785835)
chr1 (242-304)||(16561131-16561193)
chr1 (252-301)||(32260746-32260795)
chr1 (269-304)||(21948721-21948756)
chr1 (241-281)||(6997388-6997428)
[»] chr4 (20 HSPs)
chr4 (75-241)||(47716902-47717068)
chr4 (79-241)||(47857015-47857177)
chr4 (242-304)||(44600366-44600428)
chr4 (240-304)||(22135157-22135221)
chr4 (242-304)||(5100743-5100805)
chr4 (242-304)||(24347959-24348021)
chr4 (242-304)||(56030189-56030251)
chr4 (242-304)||(14787959-14788021)
chr4 (242-304)||(22132925-22132987)
chr4 (242-304)||(38890639-38890701)
chr4 (242-304)||(47211246-47211308)
chr4 (242-304)||(14789509-14789571)
chr4 (242-304)||(17662764-17662826)
chr4 (244-304)||(19322410-19322471)
chr4 (239-300)||(10112623-10112684)
chr4 (258-304)||(30136331-30136377)
chr4 (252-304)||(38209207-38209259)
chr4 (239-304)||(9863496-9863561)
chr4 (258-298)||(5516793-5516833)
chr4 (276-304)||(54929217-54929245)
[»] chr8 (10 HSPs)
chr8 (236-304)||(43529865-43529933)
chr8 (241-304)||(32339093-32339156)
chr8 (242-304)||(3265690-3265752)
chr8 (242-304)||(3873750-3873812)
chr8 (242-304)||(41384493-41384555)
chr8 (242-304)||(15808962-15809024)
chr8 (242-304)||(28283751-28283813)
chr8 (243-304)||(41382420-41382481)
chr8 (242-304)||(608470-608532)
chr8 (252-298)||(13986328-13986374)
[»] chr7 (32 HSPs)
chr7 (242-304)||(7349805-7349867)
chr7 (242-304)||(7352184-7352246)
chr7 (242-304)||(31156438-31156500)
chr7 (241-304)||(3035414-3035477)
chr7 (241-304)||(18345236-18345299)
chr7 (242-304)||(443326-443388)
chr7 (242-304)||(7092706-7092768)
chr7 (242-304)||(7094953-7095015)
chr7 (242-304)||(7472512-7472574)
chr7 (242-304)||(11756925-11756987)
chr7 (242-304)||(20299155-20299217)
chr7 (242-304)||(28487249-28487311)
chr7 (242-304)||(37412654-37412716)
chr7 (242-304)||(3676997-3677059)
chr7 (242-304)||(20625734-20625796)
chr7 (242-304)||(20629625-20629687)
chr7 (242-304)||(20642044-20642106)
chr7 (234-304)||(21470821-21470891)
chr7 (242-304)||(21989853-21989915)
chr7 (242-304)||(38395986-38396048)
chr7 (242-304)||(47865328-47865390)
chr7 (241-304)||(1606170-1606233)
chr7 (242-304)||(1849665-1849727)
chr7 (242-304)||(7470559-7470621)
chr7 (239-304)||(38393680-38393745)
chr7 (252-304)||(20297108-20297160)
chr7 (242-304)||(28485261-28485323)
chr7 (242-304)||(42331531-42331593)
chr7 (250-304)||(24258166-24258220)
chr7 (250-296)||(43254023-43254069)
chr7 (252-300)||(10690684-10690732)
chr7 (245-304)||(40281928-40281989)
[»] chr5 (19 HSPs)
chr5 (239-304)||(15551922-15551987)
chr5 (242-304)||(25803707-25803769)
chr5 (242-304)||(27912219-27912281)
chr5 (245-304)||(18509845-18509904)
chr5 (241-304)||(26097420-26097483)
chr5 (242-304)||(3373568-3373630)
chr5 (242-304)||(18468698-18468760)
chr5 (242-304)||(18596326-18596388)
chr5 (242-304)||(26098779-26098841)
chr5 (242-304)||(27910135-27910197)
chr5 (244-304)||(18511740-18511800)
chr5 (242-296)||(18466411-18466465)
chr5 (242-304)||(21288529-21288591)
chr5 (249-304)||(17415838-17415893)
chr5 (242-304)||(6661971-6662033)
chr5 (242-296)||(15143220-15143274)
chr5 (242-304)||(40221282-40221344)
chr5 (263-304)||(10586550-10586591)
chr5 (252-304)||(5779165-5779217)
[»] chr3 (19 HSPs)
chr3 (240-304)||(41848802-41848866)
chr3 (241-304)||(25533106-25533169)
chr3 (242-304)||(746422-746484)
chr3 (242-304)||(10622065-10622127)
chr3 (241-304)||(51943041-51943104)
chr3 (242-304)||(455573-455635)
chr3 (242-304)||(457950-458012)
chr3 (242-304)||(1313082-1313144)
chr3 (242-304)||(53916020-53916082)
chr3 (242-304)||(53918188-53918250)
chr3 (244-304)||(42989954-42990014)
chr3 (242-304)||(4104421-4104483)
chr3 (242-304)||(6561613-6561675)
chr3 (242-300)||(42991953-42992011)
chr3 (242-299)||(27636155-27636212)
chr3 (252-304)||(53974145-53974197)
chr3 (252-304)||(11072644-11072696)
chr3 (242-282)||(27000083-27000123)
chr3 (252-292)||(11066255-11066295)
[»] chr2 (13 HSPs)
chr2 (241-304)||(42924032-42924095)
chr2 (242-304)||(23452767-23452829)
chr2 (242-304)||(35216122-35216184)
chr2 (242-304)||(35218503-35218565)
chr2 (242-304)||(27136443-27136505)
chr2 (242-304)||(27583845-27583907)
chr2 (242-304)||(42452449-42452511)
chr2 (249-304)||(34575641-34575696)
chr2 (252-304)||(28568346-28568398)
chr2 (252-304)||(28568688-28568740)
chr2 (252-298)||(15693583-15693629)
chr2 (255-304)||(7502582-7502631)
chr2 (252-304)||(41303570-41303623)
[»] scaffold1674 (1 HSPs)
scaffold1674 (242-304)||(33-95)
[»] scaffold0468 (1 HSPs)
scaffold0468 (243-304)||(2123-2184)
[»] scaffold0031 (1 HSPs)
scaffold0031 (241-304)||(78882-78945)
[»] scaffold0005 (2 HSPs)
scaffold0005 (242-304)||(51709-51771)
scaffold0005 (242-304)||(50159-50221)
[»] scaffold0154 (1 HSPs)
scaffold0154 (242-304)||(11999-12061)
[»] scaffold0511 (1 HSPs)
scaffold0511 (242-304)||(1735-1797)
[»] scaffold0133 (1 HSPs)
scaffold0133 (242-304)||(4546-4608)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 4190871 - 4190703
Alignment:
Q  72 aacaatgggaaacagctttgggggtctcaatcctaagaatggggatcgagaatcagaaagcagacctgtgaccatatccaccacagttctagatagtaca 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4190871 aacaatgggaaacagctttgggggtctcaatcctaagaatggggatcgagaatcagaaagcagacctgtgaccatatccaccacagttctagatagtaca 4190772  T
Q  172 ccattctgcaaaccagcgttcaggaaaaggctagcggggtgatctgccccatcctcaccgccaacagatg 241  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4190771 ccattctgcaaaccagcgtt-aggaaaaggctagcggggtgatctgccccatcctcaccgccaacagatg 4190703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 12196105 - 12196042
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12196105 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 12196042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 26933158 - 26933096
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26933158 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 26933096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 5275929 - 5275866
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5275929 gtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 5275866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 30035196 - 30035134
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30035196 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 30035134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 30966923 - 30966985
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  30966923 tgttgtagtatgactccaaatttgatggatggagaatattgttgctaaaaatataaaagattt 30966985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 19705170 - 19705103
Alignment:
Q  237 agatgtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||| |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  19705170 agatttgttgtagtatgactcaaaatttgatggaagaagaatattgttgctaaaaatataaaagattt 19705103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 2629479 - 2629417
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  2629479 tgttgtagtatgactcaaaatttgatggaagaagaatattgttgctaaaaatataaaagattt 2629417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 22858544 - 22858474
Alignment:
Q  234 aacagatgtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||| |||||||||||||||||||||| |||||||||| |||||||||||  ||||||||||||||||||    
T  22858544 aacagttgtgttgtagtatgactcaaaatttgatggatgaagaatattgttaataaaaatataaaagattt 22858474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 20526548 - 20526608
Alignment:
Q  244 ttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||    
T  20526548 ttgtagtatgactcaaaatttgatgggtgaagaatattgttgctaaaaatataaaagattt 20526608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 18317751 - 18317813
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||| ||| | |||||||||||||||||||||||||||||||    
T  18317751 tgttgtagtatgactcaaaatttgaaggaagaagaatattgttgctaaaaatataaaagattt 18317813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 17011781 - 17011837
Alignment:
Q  244 ttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaag 300  Q
    ||||||||||||| |||| |||||||||| |||||||| ||||||||||||||||||    
T  17011781 ttgtagtatgacttaaaatttgatggatgaagaatattattgctaaaaatataaaag 17011837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 17852275 - 17852330
Alignment:
Q  250 tatgactcaaaaattgatggatggagaatattgt--tgctaaaaatataaaagattt 304  Q
    |||||||||||| |||||| ||||||||||||||  |||||||||||||||||||||    
T  17852275 tatgactcaaaatttgatg-atggagaatattgtgttgctaaaaatataaaagattt 17852330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 30443036 - 30443076
Alignment:
Q  264 tgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||| |||||||||||| ||||||||||| ||||||    
T  30443036 tgatggatgaagaatattgttgttaaaaatataagagattt 30443076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 30445243 - 30445283
Alignment:
Q  264 tgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||| ||||||||||||||| |||||||||| ||||    
T  30445243 tgatggatgaagaatattgttgctagaaatataaaatattt 30445283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 52210406 - 52210241
Alignment:
Q  75 aatgggaaacagctttgggggtctcaatcctaagaatggggatcgagaatcagaaagcagacctgtgaccatatccaccacagttctagatagtacacca 174  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52210406 aatgggaaacagctttgggggtctcaatcctaagaatagggatcgagaatcagaaagcagacctgtgaccatatccaccacagttctagatagtacacca 52210307  T
Q  175 ttctgcaaaccagcgttcaggaaaaggctagcggggtgatctgccccatcctcaccgccaacagatg 241  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52210306 ttctgcaaaccagcgtt-aggaaaaggctagcggggtgatctgccccatcctcaccgccaacagatg 52210241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 4131885 - 4131820
Alignment:
Q  239 atgtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4131885 atgtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 4131820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 46432637 - 46432574
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46432637 gtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 46432574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 9460013 - 9459951
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9460013 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 9459951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 9463840 - 9463778
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9463840 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 9463778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 17325227 - 17325165
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17325227 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 17325165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 24325347 - 24325409
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24325347 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 24325409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 39931762 - 39931824
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39931762 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 39931824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 47905956 - 47906018
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47905956 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 47906018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 48664852 - 48664914
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48664852 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 48664914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 28998844 - 28998782
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  28998844 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaactataaaagattt 28998782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 29004560 - 29004498
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  29004560 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaactataaaagattt 29004498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 31736115 - 31736053
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  31736115 tgttgtagtatgactcaaaatttgatggaaggagaatattgttgctaaaaatataaaagattt 31736053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 45694026 - 45693962
Alignment:
Q  240 tgtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45694026 tgtgttgtactatgattcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 45693962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 6115718 - 6115655
Alignment:
Q  242 tgttgtagtatgactcaaaaatt-gatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6115718 tgttgtaggatgactcaaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 6115655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 6997214 - 6997276
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  6997214 tgttatagtatgactcaaaatttgatggatggagaatattattgctaaaaatataaaagattt 6997276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 15295439 - 15295377
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  15295439 tgttgtagtatgactcaaaatttgatggaagaagaatattgttgctaaaaatataaaagattt 15295377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 27339730 - 27339668
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||    
T  27339730 tgttgtagtatgactccaaatttgacggatggagaatattgttgctaaaaatataaaagattt 27339668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 2949815 - 2949753
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||| ||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  2949815 tgttatagtatgactcaaaatttcatggatgaagaatattgttgctaaaaatataaaagattt 2949753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 27337532 - 27337470
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||    
T  27337532 tgttgtagtatgactccaaatttgatggatggggaatattgttgctaaaaatatataagattt 27337470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 13785835 - 13785783
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  13785835 tgactcaaaaattgatggatggagaatattgtcgctaaaaatatgaaagattt 13785783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 16561131 - 16561193
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||| |||||| |||||| ||| |||||| |||||||||||||||||||||||||| ||||    
T  16561131 tgttgttgtatgattcaaaatttgttggatgaagaatattgttgctaaaaatataaaatattt 16561193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 32260746 - 32260795
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaatataaaaga 301  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  32260746 tgactcaaaatttgatggatgaagaagattgttgctaaaaatataaaaga 32260795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 304
Target Start/End: Complemental strand, 21948756 - 21948721
Alignment:
Q  269 gatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||||||||||||||||||    
T  21948756 gatggagaatattgttgctaaaaatataaaagattt 21948721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 6997428 - 6997388
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatatt 281  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  6997428 gtgttgtagtatgactcaaaatatgatggatggagaatatt 6997388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 75 - 241
Target Start/End: Original strand, 47716902 - 47717068
Alignment:
Q  75 aatgggaaacagctttgggggtctcaatcctaagaatggggatcgagaatcagaaagcagacctgtgaccatatccaccacagttctagatagtacacca 174  Q
    |||||||||||||||||||| | | |||||||||||| |||| || | ||||||||| |||||||||||||||||||||||||||||||| |  ||||||    
T  47716902 aatgggaaacagctttggggcttttaatcctaagaatcgggaacgggtatcagaaagaagacctgtgaccatatccaccacagttctagacaagacacca 47717001  T
Q  175 ttctgcaaaccagcgttcaggaaaaggctagcggggtgatctgccccatcctcaccgccaacagatg 241  Q
    |||||||||||||| || |||||||||||||| || |||||||| ||||||||||| ||||||||||    
T  47717002 ttctgcaaaccagcattaaggaaaaggctagcaggatgatctgcaccatcctcaccaccaacagatg 47717068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 47857177 - 47857015
Alignment:
Q  79 ggaaacagctttgggggtctcaatcctaagaatggggatcgagaatcagaaagcagacctgtgaccatatccaccacagttctagatagtacaccattct 178  Q
    |||||||||||||||| | | |||||||||||| |||| || | ||||||||| |||||||||||| ||||||||||||||||||| |  |||||| |||    
T  47857177 ggaaacagctttggggcttttaatcctaagaatcgggaacgggcatcagaaagaagacctgtgaccgtatccaccacagttctagacaagacaccactct 47857078  T
Q  179 gcaaaccagcgttcaggaaaaggctagcggggtgatctgccccatcctcaccgccaacagatg 241  Q
    ||||||||||  | |||||||||||||| || |||||||| ||||||||||| ||||||||||    
T  47857077 gcaaaccagcacttaggaaaaggctagcaggatgatctgcaccatcctcaccaccaacagatg 47857015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 44600428 - 44600366
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44600428 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 44600366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 22135221 - 22135157
Alignment:
Q  240 tgtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22135221 tgtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 22135157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 5100743 - 5100805
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5100743 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 5100805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 24347959 - 24348021
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24347959 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 24348021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 56030189 - 56030251
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  56030189 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 56030251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 14788021 - 14787959
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  14788021 tgttgtagtatgactcaaaatttgatggatggagaataatgttgctaaaaatataaaagattt 14787959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 22132987 - 22132925
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22132987 tgttgtagtatgattcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 22132925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 38890701 - 38890639
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38890701 tgttgtagcatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 38890639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 47211308 - 47211246
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  47211308 tgttgtagtatgacttaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 47211246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 14789571 - 14789509
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  14789571 tgttgtagtatgactcaaaatttgatggatgaagaataatgttgctaaaaatataaaagattt 14789509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 17662826 - 17662764
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  17662826 tgttgtagtatgactacaaatttgatggatggagaatattgttgctaaaaatataaaagattt 17662764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 19322410 - 19322471
Alignment:
Q  244 ttgtagtatgactcaaaaattgatggatggagaata-ttgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||    
T  19322410 ttgtagtatgactcaaaatttgatggatggagaatattttttgctaaaaatataaaagattt 19322471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 10112623 - 10112684
Alignment:
Q  239 atgtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaag 300  Q
    |||||||||||||||||| |||| ||| || ||| |||||||||||||||||||||||||||    
T  10112623 atgtgttgtagtatgacttaaaatttgttgaatgaagaatattgttgctaaaaatataaaag 10112684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 30136331 - 30136377
Alignment:
Q  258 aaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||    
T  30136331 aaaatttgatgaatggagaatattgttgctaaaaatataaaagattt 30136377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 38209259 - 38209207
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||| |||||||||| | |||||||||| ||||||||||||||||||    
T  38209259 tgactcaaaatttgatggatgaaaaatattgttgttaaaaatataaaagattt 38209207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 9863496 - 9863561
Alignment:
Q  239 atgtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||| |||||||||||| ||| |||||| |  |||||||| ||||||||||||| |||||    
T  9863496 atgtgttgtaatatgactcaaaatttgttggatgaaatatattgttactaaaaatataaatgattt 9863561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 5516833 - 5516793
Alignment:
Q  258 aaaaattgatggatggagaatattgttgctaaaaatataaa 298  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  5516833 aaaatttgatgaatggagaatattgttgctaaaaatataaa 5516793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 304
Target Start/End: Complemental strand, 54929245 - 54929217
Alignment:
Q  276 aatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||||||||||||    
T  54929245 aatattgttgctaaaaatataaaagattt 54929217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 43529865 - 43529933
Alignment:
Q  236 cagatgtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43529865 cagatgtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 43529933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 32339093 - 32339156
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32339093 gtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 32339156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 3265752 - 3265690
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3265752 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 3265690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 3873750 - 3873812
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3873750 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 3873812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 41384493 - 41384555
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41384493 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 41384555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 15808962 - 15809024
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15808962 tgttttagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 15809024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 28283813 - 28283751
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  28283813 tgttgtagtatgactcaaaatttgatggatggagaatatttttgctaaaaatataaaagattt 28283751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 41382420 - 41382481
Alignment:
Q  243 gttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  41382420 gttgtagtatgactcaaaatttgatggatggagaatattgttgttaaaaatataaaagattt 41382481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 608470 - 608532
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  608470 tgttgtagtatcactcaaaatttgatggaagaagaatattgttgctaaaaatataaaagattt 608532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 13986374 - 13986328
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaatataaa 298  Q
    |||||||||| || ||||||| |||| ||||||||||||||||||||    
T  13986374 tgactcaaaattttatggatgaagaagattgttgctaaaaatataaa 13986328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 7349867 - 7349805
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7349867 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 7349805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 7352246 - 7352184
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7352246 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 7352184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 31156500 - 31156438
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31156500 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 31156438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 3035414 - 3035477
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3035414 gtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 3035477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 18345236 - 18345299
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18345236 gtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 18345299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 443326 - 443388
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  443326 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 443388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 7092768 - 7092706
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7092768 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 7092706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 7095015 - 7094953
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7095015 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 7094953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 7472574 - 7472512
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7472574 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 7472512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 11756925 - 11756987
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11756925 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 11756987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 20299155 - 20299217
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20299155 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 20299217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 28487249 - 28487311
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28487249 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 28487311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 37412716 - 37412654
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37412716 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 37412654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 3676997 - 3677059
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  3676997 tgttgtagtatgactcaaaatttgatagatggagaatattgttgctaaaaatataaaagattt 3677059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 20625734 - 20625796
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20625734 tgttctagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 20625796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 20629625 - 20629687
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20629625 tgttctagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 20629687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 20642044 - 20642106
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20642044 tgttctagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 20642106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 21470891 - 21470821
Alignment:
Q  234 aacagatgtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||| ||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  21470891 aacagatatgttgtagtttgactccaaatttgatggatggagaatattgttgctaaaaatataaaagattt 21470821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 21989853 - 21989915
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21989853 tgttgtagtatgacccaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 21989915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 38395986 - 38396048
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  38395986 tgttgtagtatgactccaaatttgatggatggagaatattgttgctaaaaatataaaagattt 38396048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 47865328 - 47865390
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  47865328 tgttgtagtatgactccaaatttgatggatggagaatattgttgctaaaaatataaaagattt 47865390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 1606170 - 1606233
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  1606170 gtgttgtagtatgactcaaaatttgatggaagaagaatattgttgctaaaaatataaaagattt 1606233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 1849665 - 1849727
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  1849665 tgttgtagtatgactcaaaatttgatggaagaagaatattgttgctaaaaatataaaagattt 1849727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 7470621 - 7470559
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  7470621 tgttgtagtatgactcaaaatttgatggatggagaatattattgctaaaaatataaaacattt 7470559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 38393680 - 38393745
Alignment:
Q  239 atgtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |||||||    
T  38393680 atgtgttgtagtatgattctaaatttgatggatggagaatattgttgctaaaaatatataagattt 38393745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 20297108 - 20297160
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20297108 tgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 20297160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 28485261 - 28485323
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| ||||    
T  28485261 tgttgtagtatgattcaaaatttgatggatgaagaatattgttgctaaaaatataaaatattt 28485323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 42331593 - 42331531
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||    
T  42331593 tgttgtagtatgacttaaaatttgatgaatgaagaatattgttgctaaaaatataaaagattt 42331531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 24258166 - 24258220
Alignment:
Q  250 tatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  24258166 tatgactcaaaatttgatggaagaagaatattgttgctaaaaatataaaagattt 24258220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 43254069 - 43254023
Alignment:
Q  250 tatgactcaaaaattgatggatggagaatattgttgctaaaaatata 296  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||    
T  43254069 tatgtctcaaaatttgatggatggagaatattgttgctaaaaatata 43254023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 10690684 - 10690732
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaatataaaag 300  Q
    |||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  10690684 tgactcaaaatttgatggagggagaagattgttgctaaaaatataaaag 10690732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 40281989 - 40281928
Alignment:
Q  245 tgtagtatgactcaaaaattgatggatggagaata--ttgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||| |||||||||| |||| |  |||||||||||||||||||| ||||    
T  40281989 tgtagtatgactcaaaatttgatggatgaagaagaatttgttgctaaaaatataaaatattt 40281928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 15551922 - 15551987
Alignment:
Q  239 atgtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15551922 atgtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 15551987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 25803707 - 25803769
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25803707 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 25803769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 27912219 - 27912281
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27912219 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 27912281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 18509904 - 18509845
Alignment:
Q  245 tgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18509904 tgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 18509845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 26097420 - 26097483
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  26097420 gtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaaaattt 26097483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 3373630 - 3373568
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  3373630 tgttgtagtatgactcagaatttgatggatggagaatattgttgctaaaaatataaaagattt 3373568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 18468698 - 18468760
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  18468698 tgttgtagtatgactcaaaatttgatggatggagaatatttttgctaaaaatataaaagattt 18468760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 18596326 - 18596388
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18596326 tgttgtactatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 18596388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 26098841 - 26098779
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  26098841 tgttgtagtatgactcaaaatttgatggatggagaatattattgctaaaaatataaaagattt 26098779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 27910135 - 27910197
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  27910135 tgttgtagtatgactcaaaatttgatggatggagaatattattgctaaaaatataaaagattt 27910197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 18511800 - 18511740
Alignment:
Q  244 ttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  18511800 ttgtagtatgactcaaaatttgatggatgaagaatattgttgctaaaaatataaaagattt 18511740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 18466411 - 18466465
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatata 296  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18466411 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 18466465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 21288529 - 21288591
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  21288529 tgttgtagtataactcaaaatttgatggatggagaatattgttgctaaaaataaaaaagattt 21288591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 17415893 - 17415838
Alignment:
Q  249 gtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  17415893 gtatgactcaaaatttgatggatgaagaatattgttgctaaaaatataaaagattt 17415838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 6662033 - 6661971
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||| ||||    
T  6662033 tgttgtagtatgacttaaaacttgatggatgaagaatattgttgctaaaaatataaaatattt 6661971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 15143220 - 15143274
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatata 296  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15143220 tgttatagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 15143274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 40221282 - 40221344
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| || || |||| |||||||||||||||||||||||||||||||    
T  40221282 tgttgtagtatgactcaaaatttaattgatgaagaatattgttgctaaaaatataaaagattt 40221344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 10586550 - 10586591
Alignment:
Q  263 ttgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  10586550 ttgatggatggggaatattgttgctaaaaatataaaagattt 10586591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 5779217 - 5779165
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||| |||| ||||| |||| |||| ||| ||||||||||||||||||||||    
T  5779217 tgacttaaaatttgatagatgaagaagattattgctaaaaatataaaagattt 5779165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 41848802 - 41848866
Alignment:
Q  240 tgtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41848802 tgtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 41848866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 25533106 - 25533169
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25533106 gtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 25533169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 746422 - 746484
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  746422 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 746484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 10622127 - 10622065
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10622127 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 10622065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 51943041 - 51943104
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  51943041 gtgttgtagtatgactcaaaatttgatggatgaagaatattgttgctaaaaatataaaagattt 51943104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 455573 - 455635
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  455573 tgttgtagtatgactcaaaatttgatggatggggaatattgttgctaaaaatataaaagattt 455635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 457950 - 458012
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  457950 tgttgtagtatgactcaaaatttgatggatggggaatattgttgctaaaaatataaaagattt 458012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 1313082 - 1313144
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  1313082 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaatgattt 1313144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 53916082 - 53916020
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  53916082 tgttgtagtatgactcaaaatttgagggatggagaatattgttgctaaaaatataaaagattt 53916020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 53918250 - 53918188
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53918250 tgttatagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 53918188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 42989954 - 42990014
Alignment:
Q  244 ttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  42989954 ttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaaaattt 42990014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 4104483 - 4104421
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  4104483 tgttgtagtatgactcaaaatttgatggaagaagaatattgttgctaaaaatataaaagattt 4104421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 6561613 - 6561675
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||    
T  6561613 tgttgtagtatgactcgaaatttgatggatgaagaatattgttgctaaaaatataaaagattt 6561675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 42991953 - 42992011
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaag 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  42991953 tgttgtagtatgactcaaaatttgatggatggagaatattgttgttaaaaatataaaag 42992011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 27636212 - 27636155
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaa 299  Q
    ||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  27636212 tgttgtagtatgatttaaaatttgatggatggagaatattgttgctaaaaatataaaa 27636155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 53974197 - 53974145
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||| |||||||||| ||||| |||||| ||||||||||||||||||    
T  53974197 tgactcaaaatttgatggatgaagaatgttgttgttaaaaatataaaagattt 53974145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 11072644 - 11072696
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||| |||||||||| |||| |||||||| ||||||||||| |||||    
T  11072644 tgactcaaaatttgatggatgaagaagattgttgcaaaaaatataaatgattt 11072696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 27000083 - 27000123
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattg 282  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  27000083 tgttgtagtatgactgaaaatttgatggatggagaatattg 27000123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 11066255 - 11066295
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaa 292  Q
    ||||||| || |||||||||| |||||||||||||||||||    
T  11066255 tgactcataatttgatggatgaagaatattgttgctaaaaa 11066295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 42924095 - 42924032
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42924095 gtgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 42924032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 23452829 - 23452767
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23452829 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 23452767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 35216184 - 35216122
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  35216184 tgttgtagtatgactcaaaatttgatggatgaagaatattgttgctaaaaatataaaagattt 35216122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 35218565 - 35218503
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  35218565 tgttgtagtatgactcaaaatttgatggatgaagaatattgttgctaaaaatataaaagattt 35218503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 27136505 - 27136443
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||    
T  27136505 tgttgtagtatgactcaaaatttgatggatgaagaatattggtgctaaaaatataaaagattt 27136443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 27583907 - 27583845
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  27583907 tgttgtagtatgactcaaattttgatggatgaagaatattgttgctaaaaatataaaagattt 27583845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 42452449 - 42452511
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  42452449 tgttgtagtatgacttaaaatttgatggatgaagaatattgttgctaaaaatataaaagattt 42452511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 34575696 - 34575641
Alignment:
Q  249 gtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  34575696 gtatgactcaaaatttgatggatgaagaatattgttgctaaaaatataaaagattt 34575641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 28568346 - 28568398
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||| |||||||||| |||||||||||| ||||||||||||||||||    
T  28568346 tgactcaaaatttgatggatgaagaatattgttgttaaaaatataaaagattt 28568398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 28568740 - 28568688
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||| ||||| |||| |||||||||||||||||| ||||||||||||    
T  28568740 tgactcaaaatttgatagatgaagaatattgttgctaaaactataaaagattt 28568688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 15693583 - 15693629
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgctaaaaatataaa 298  Q
    ||||| |||| |||||||||| | |||||||||||||||||||||||    
T  15693583 tgacttaaaatttgatggatgaataatattgttgctaaaaatataaa 15693629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 7502582 - 7502631
Alignment:
Q  255 ctcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||| |||||||||| |||| ||||||||| ||| ||||||||||||    
T  7502582 ctcaaaatttgatggatgaagaagattgttgctcaaagtataaaagattt 7502631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 41303623 - 41303570
Alignment:
Q  252 tgactcaaaaattgatggatggagaatattgttgcta-aaaatataaaagattt 304  Q
    ||||||| || |||||||||| |||| |||||||||| ||||||||||||||||    
T  41303623 tgactcagaatttgatggatgaagaagattgttgctaaaaaatataaaagattt 41303570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 95 - 33
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  95 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 33  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 2184 - 2123
Alignment:
Q  243 gttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2184 gttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 2123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 78882 - 78945
Alignment:
Q  241 gtgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  78882 gtgttgtagtatgacttaaaatttgatggatggagaatattgttgctaaaaatataaaagattt 78945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 51709 - 51771
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  51709 tgttgtagtatgactcaaaatttgatggatggagaataatgttgctaaaaatataaaagattt 51771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 50159 - 50221
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  50159 tgttgtagtatgactcaaaatttgatggatgaagaataatgttgctaaaaatataaaagattt 50221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 12061 - 11999
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  12061 tgttgtagtatgattcaaaatttgatggatggagaatattgttgctaaaaatataaaaaattt 11999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 1735 - 1797
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    |||||||||||||||||||| |||| ||| | |||||||||||||||||||||||||||||||    
T  1735 tgttgtagtatgactcaaaatttgaaggaagaagaatattgttgctaaaaatataaaagattt 1797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 4546 - 4608
Alignment:
Q  242 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatataaaagattt 304  Q
    ||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  4546 tgttgcagtataactcaaaatttgatggatgaagaatattgttgctaaaaatataaaagattt 4608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University