View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_high_35 (Length: 285)
Name: NF1247_high_35
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 1842646 - 1842456
Alignment:
| Q |
30 |
tgatcttgtgtgaatattttagcactttgagttgaggagtcttctcttgctgagagtttttgtttcaaaatcaaaccaccattctgttcgaagaatttct |
129 |
Q |
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| T |
1842646 |
tgatcttgtgtgaatattttagtgctttcagttgaggagtcttctcttgttgagagtttttgttttaaaatcagaccaccattctgctcaaagaatttct |
1842547 |
T |
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| Q |
130 |
ctttcattttgatgaatttccttttatggtatattaagtacgagaatgtgcccaccaaaagaagaataagtgttgctcctactcctgcatt |
220 |
Q |
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| T |
1842546 |
ctttcattttgatgaatttccttttatggtatattaagtacgagaatgtcccaaccaaaagaagaataagcgttgctcctactcctgcatt |
1842456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 1868198 - 1868031
Alignment:
| Q |
63 |
gaggagtcttctcttgctgagagtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatgaatttccttttatggtata |
162 |
Q |
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| T |
1868198 |
gaggagtcttctcttgttgagagtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatgaatttcctcttatggtaca |
1868099 |
T |
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| Q |
163 |
ttaagtacgagaatgtgcccaccaaaagaagaataagtgttgctcctactcctgcattcaaaatatat |
230 |
Q |
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| T |
1868098 |
ttaagtacgagaatgttcccaaaaagagaagaataaatgttattcctactcctgcacgcaaaatatat |
1868031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 1868255 - 1868207
Alignment:
| Q |
30 |
tgatcttgtgtgaatattttagcactttgagttgaggagtcttctcttg |
78 |
Q |
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| T |
1868255 |
tgatcttgtgtgaatattttagcactttgagttgaggagtcttgtcttg |
1868207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 1856573 - 1856463
Alignment:
| Q |
120 |
aagaatttctctttcattttgatgaatttccttttatggtatattaagtacgagaatgtgcccaccaaaagaagaataagtgttgctcctactcctgcat |
219 |
Q |
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| T |
1856573 |
aagaatttctctttcaatttgacaagtttccttttttggtaaattaagtaggaaattatgcacagaaatagaacaataaatactgctcctactcctgcat |
1856474 |
T |
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| Q |
220 |
tcaaaatatat |
230 |
Q |
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| T |
1856473 |
ccaaaatatat |
1856463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 9118208 - 9118107
Alignment:
| Q |
68 |
gtcttctcttgctgagagtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatgaatttccttttatggtatattaag |
167 |
Q |
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| T |
9118208 |
gtcttctcttgtaaagagtttttgtagcaaaatgaaaccaccattttgttgaaagaatttttgttttagtttgatgagttttcttttttggtatatcaag |
9118109 |
T |
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| Q |
168 |
ta |
169 |
Q |
| |
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|| |
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| T |
9118108 |
ta |
9118107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 1816435 - 1816518
Alignment:
| Q |
84 |
agtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatgaatttccttttatggtatattaag |
167 |
Q |
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| T |
1816435 |
agtttttgttccaaaatagaacctccattctgcctaaagaacttctctttcaatttgataaatttccttctttggtatattaag |
1816518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 37567588 - 37567444
Alignment:
| Q |
84 |
agtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatgaatttccttttatggtatattaagtacgagaatgtgccca |
183 |
Q |
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||||| ||||||||||| |||| |||||||| |||||||||||||||| ||||| | ||||||||| |||||||||||||| || | | | | || |
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| T |
37567588 |
agtttctgtttcaaaatagaacctccattctgcctaaagaatttctctttcaatttgacaagtttccttttttggtatattaagtaggatattatccaca |
37567489 |
T |
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| Q |
184 |
ccaaaagaagaataagtgttgctcctactcctgcattcaaaatat |
228 |
Q |
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| T |
37567488 |
caaatagaacaataaatactgctcctactcctgcatccgaaatat |
37567444 |
T |
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