View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1247_high_4 (Length: 650)
Name: NF1247_high_4
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 230 - 625
Target Start/End: Complemental strand, 38116994 - 38116599
Alignment:
| Q |
230 |
attggtccgttgttgctctcgaatttcccacaccccaatcagcgatatcaaagccttcgatcgatttggtgagagaatggaagctgaatcatgtgttcga |
329 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38116994 |
attggtccgttgttgctctcgactttcccacaccccaatcagcggtatcaaagctttcgatcgatttggtgagagaatggaagctggatcatgtgttcga |
38116895 |
T |
|
| Q |
330 |
tttggttataggatgtgagaactaacatttaaaggggagattgttgaatttcaagtgtgagtgttaagcctcacattacctatgaatatggtaaaatatt |
429 |
Q |
| |
|
| ||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38116894 |
tctggttataggacgtgagaactaacatttaagggggagattgttggatttcaagtgcgagtgttaagcctcacattacctatgaatatggtaaaatatt |
38116795 |
T |
|
| Q |
430 |
ggctatataagatatatgacacgtatatttaacatcttaagattttggatgaagatgtgatttcatcctctcttatcctcttgaaacattgactcgttgt |
529 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38116794 |
ggctatataagatatgtgacacgtatacataacgtcttaaggttttggatgaagatgtggtttcatcctctcttatcgtcttgaaacattgactcgttgt |
38116695 |
T |
|
| Q |
530 |
tacacccgactttcccgaactcctcaacacttcgagacttttaatgttatgaacaaactaaaagaacaatgtcctcgcaatcatattgttagaatt |
625 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38116694 |
tacacccgacttccccgaactcctcaacacttcgagacttttaatgttatgaacaaactaaaagaacaatgtcctaacaatcatattgttagaatt |
38116599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 38117156 - 38117026
Alignment:
| Q |
60 |
gtctcacacttgtaaatttatttttagactttgtttcatcaaatacaaactcttaacaagtttaattgtgcacggtgtgaaatcattgccaaagtaggga |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38117156 |
gtctcacacttgtaaatttatttttagactttgtttcatcaaatacaaactcttaacaagtttaattgtgcacggtgtgaaatcattggcaaagtaggga |
38117057 |
T |
|
| Q |
160 |
aacaatttaaattttttatctcatgtgtaag |
190 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
38117056 |
aacaatttaatttttttatctcatgtgtaag |
38117026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 449
Target Start/End: Original strand, 29447809 - 29447947
Alignment:
| Q |
311 |
agctgaatcatgtgttcgatttggttataggatgtgagaactaacatttaaaggggagattgttgaatttcaagtgtgagtg-ttaagcctcacattacc |
409 |
Q |
| |
|
|||||||||| |||| |||| |||||||||| ||| |||| | ||||||| | ||||||||||||||||| ||||| || ||||| ||||||| ||| |
|
|
| T |
29447809 |
agctgaatcacatgttgaattttgttataggatctgataactcatatttaaaagagagattgttgaatttcatatgtgactgattaagtctcacatcacc |
29447908 |
T |
|
| Q |
410 |
tatgaatatggtaaaatattggctatataagatatatgac |
449 |
Q |
| |
|
||| ||| || |||| | || | ||||||| ||||||||| |
|
|
| T |
29447909 |
tataaat-tgttaaagtgtttgatatataaaatatatgac |
29447947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 494
Target Start/End: Complemental strand, 30724584 - 30724555
Alignment:
| Q |
465 |
cttaagattttggatgaagatgtgatttca |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30724584 |
cttaagattttggatgaagatgtgatttca |
30724555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University