View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_high_40 (Length: 263)
Name: NF1247_high_40
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 4405313 - 4405546
Alignment:
| Q |
1 |
aaaattaacaacacattttttaacatactcatttttactagttataatacatgtaagcttcaccaaattaaacgtgactctcatgcattttaatcaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4405313 |
aaaattaacaacacattttttaacatactcatttttaccagttataatacatgtaagcttcaccaaattaaacgtgactctaatgcattttaatcaataa |
4405412 |
T |
|
| Q |
101 |
gagagaccgtattataaaatgtgaaagagttttctcttagcacccctataaatattttgaggttttgtgcaagcttgattaagacttactaacagttatt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |||| ||||| |
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| T |
4405413 |
gagagaccgtattacaaaatgtgaaagagttttctcttagcacccctagaaatattttgagattttgtgtaagcttgattaagacttaccaacaattatt |
4405512 |
T |
|
| Q |
201 |
aattgatgttccaaacaggttataggttacaact |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4405513 |
aattgatgttccaaacaggttataggttacaact |
4405546 |
T |
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