View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_high_42 (Length: 255)
Name: NF1247_high_42
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 9192242 - 9192000
Alignment:
| Q |
1 |
tcaactgtcaaaacccatttggctctaattgggacgttatagagggtcggatcctgaaattttaatttgtggaaaaaatatcattatcaacaattttctt |
100 |
Q |
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| T |
9192242 |
tcaactgtcaaaacccatttggctctaattgggacgttatagagggtcggaccctgaaattttaatttgtggaaaaaatatcattataaacaattttctt |
9192143 |
T |
|
| Q |
101 |
tatatcattagaaagtcacacgtataaacggtggaatcagtatatgaactacaatttcgatatttttatcggttgagttaagatttatagacggttaata |
200 |
Q |
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| T |
9192142 |
tatatcattagaaagtcacacgtataaacggt-gaatcagtgtatgaactacaatttcaatatttttatcggttgagttaagatttatagacggttaata |
9192044 |
T |
|
| Q |
201 |
tatttctttaagcagatcaaataattagttaacaattcatctct |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9192043 |
tatttctttaagcagatcaaataattagttaacaattcatctct |
9192000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 35868297 - 35868260
Alignment:
| Q |
151 |
acaatttcgatatttttatcggttgagttaagatttat |
188 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
35868297 |
acaatttcgatatttttatcggttgagttaagacttat |
35868260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 186
Target Start/End: Complemental strand, 41843949 - 41843914
Alignment:
| Q |
151 |
acaatttcgatatttttatcggttgagttaagattt |
186 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
41843949 |
acaatttcaatatttttatcggttgagttaagattt |
41843914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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