View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_high_43 (Length: 253)
Name: NF1247_high_43
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_high_43 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 15815340 - 15815563
Alignment:
| Q |
30 |
cagttgagtccttcgtatttttggttccggttaaattccatgatggggtaacagaaatttttcctgttgtattgtggtcagaataaccgatgacgcatat |
129 |
Q |
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| T |
15815340 |
cagttgagtccttcgtgtttttggttccggttaaattccatgatggggtaacagaaatttttcctgatgtattatggtcagaataaccgatgacacatat |
15815439 |
T |
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| Q |
130 |
gtcataccatatcatagccgagacgccattgggacaacgttgagcgatatctctaacagcagcgttgatacaaaactgacagaaacttcctgttatgtca |
229 |
Q |
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| T |
15815440 |
gtcataccatatcatagccgagacgccattgggacaacattgagcgatcgctctaacagcagcgttgatacaaaattgacagaaacttcctgttacgtca |
15815539 |
T |
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| Q |
230 |
ccacgacaatcgtagaatccatac |
253 |
Q |
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| T |
15815540 |
ccacgacaatcgtagaatccatac |
15815563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 252
Target Start/End: Original strand, 15801885 - 15802082
Alignment:
| Q |
55 |
tccggttaaattccatgatggggtaacagaaatttttcctgttgtattgtggtcagaataaccgatgacgcatatgtcataccatatcatagccgagacg |
154 |
Q |
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| T |
15801885 |
tccggttatattccatgatggtgttacaataacttttcctgtcgtattctggtttgtgtaacccatgacgcatacatcataccatatcaaagccgaaaca |
15801984 |
T |
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| Q |
155 |
ccattgggacaacgttgagcgatatctctaacagcagcgttgatacaaaactgacagaaacttcctgttatgtcaccacgacaatcgtagaatccata |
252 |
Q |
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| T |
15801985 |
ctgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaaccgtataacccata |
15802082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 252
Target Start/End: Original strand, 15794144 - 15794283
Alignment:
| Q |
113 |
taaccgatgacgcatatgtcataccatatcatagccgagacgccattgggacaacgttgagcgatatctctaacagcagcgttgatacaaaactgacaga |
212 |
Q |
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| T |
15794144 |
taacccatgatgcataaatcataccatatcatagctgagacactgttgggacaatattttgcaatatctctaacaacagtgttgatacaaaattgacaga |
15794243 |
T |
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| Q |
213 |
aacttcctgttatgtcaccacgacaatcgtagaatccata |
252 |
Q |
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| T |
15794244 |
aacttcctgtgatgtcaccccgacaatcatagaacccata |
15794283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 15700237 - 15700315
Alignment:
| Q |
162 |
gacaacgttgagcgatatctctaacagcagcgttgatacaaaactgacagaaacttcctgttatgtcaccacgacaatc |
240 |
Q |
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| T |
15700237 |
gacaacgttgagcaatttctttgacagcagtgttgatacaaaattgacagaaacttcctgtgacgtcagcccgacaatc |
15700315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 218
Target Start/End: Original strand, 15807496 - 15807667
Alignment:
| Q |
47 |
tttttggttccggttaaattccatgatggggtaacagaaatttttcctgttgtattgtggtcagaataaccgatgacgcatatgtcataccatatcatag |
146 |
Q |
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| T |
15807496 |
tttttggatccggttacattccatgatggttctagaaaaactcttcctgagggattctggttagtataacccatgatgcatacatcataccatataatag |
15807595 |
T |
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| Q |
147 |
ccgagacgccattgggacaacgttgagcgatatctctaacagcagcgttgatacaaaactgacagaaacttc |
218 |
Q |
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| T |
15807596 |
ccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatgcaaaattgacagaaacttc |
15807667 |
T |
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