View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_high_44 (Length: 251)
Name: NF1247_high_44
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_high_44 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 7020828 - 7020586
Alignment:
| Q |
9 |
caagaatataacgtaagaaatagaaaactttaaaacagagagaaatcactacaattgtctaataaaaataagatgataatagtatgtgacaaattgtaca |
108 |
Q |
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| T |
7020828 |
caagaatataacgtaagaaatagaaaactttaaaacggagagaaatcactacaattgtctaataaaaataagatgataatagtatgtgacaaattgtaca |
7020729 |
T |
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| Q |
109 |
acacataaagttttgtttcatatgtgacgtgatttatcatgaaatttttgtttcagtttatattattcatcatgattttttgtttcatatatagtgctga |
208 |
Q |
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| T |
7020728 |
acacataaagttttgtttcatatgtgacgtgatttatcatgaaatttttgtttcagtttatatgattcatcatgattttttgtttcatatatagtgctga |
7020629 |
T |
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| Q |
209 |
ttgggaggtctcatataaaaaacacaagaaggatccagttcac |
251 |
Q |
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||||||||||||||||| || |||||||||||||||||||||| |
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| T |
7020628 |
ttgggaggtctcatatagaagacacaagaaggatccagttcac |
7020586 |
T |
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