View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1247_low_1 (Length: 740)
Name: NF1247_low_1
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 158 - 609
Target Start/End: Original strand, 41902519 - 41902983
Alignment:
| Q |
158 |
tattttttatttggtagtgcacactctcaaactgataaaatccnnnnnnntattcagcaaactatagag-------------atagcctttatctccata |
244 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41902519 |
tattttttatttggtagtacacactctcaaactgataaaatccaaaaaaatattcagcaaactatagagtacattgaaaaaaatagcctttatctccata |
41902618 |
T |
|
| Q |
245 |
gnnnnnnnntaatcaatttaatagtctaaactgatttgcttattgnnnnnnncaccatcatcatcactatcttatgctgcataaggtctcttgttgattg |
344 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
41902619 |
gaaaaaaaataatcaatttaatagtctaaactgatttgcttattgtttttttcaccatcatcatcactatcttatgcggtataaggtctcttgttgattg |
41902718 |
T |
|
| Q |
345 |
ataattaagctccaccagaaccaaatttctttcccaacataagcacctgcagtttatcataacttgcaagcacaccagcaccagctactgctcgaagaat |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41902719 |
ataattaagctccaccagaaccaaatttctttcccaacataagcacctgcagtttatcataacttgcaagcacaccagcaccagctactgctcgaagaat |
41902818 |
T |
|
| Q |
445 |
gtttgcaccagcacctttgaagagagattttggaccttcagttttcacaatttgtgagaaagcatccaaagaactcttgtactttacagcttcacctgat |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41902819 |
gtttgcaccagcacctttgaagagagattttggaccttcagttttcacaatttgtgagaaagcatccaaagaactcttgtactttacagcttcacctgat |
41902918 |
T |
|
| Q |
545 |
gtcatcatcattcttctacgaactgtgtctaaagggtaagatgcaacactagcaccaaccgtaac |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41902919 |
gtcatcatcattcttctacgaactgtgtctaaagggtaagatgcaacactagcaccaaccgtaac |
41902983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 41902306 - 41902451
Alignment:
| Q |
13 |
aatatgaaaatttctgttaatagtcgttttagttaaattgtgagggttggtcaattttgtactcaaattttgtgaactatgttatgcaaatttgtaacaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
41902306 |
aatatgaaaatttctgttaatagtcgttttagttaaattgtgagggttggtcaattttgtactcaaattttgtgaactaagttatgtaaatttgtaacaa |
41902405 |
T |
|
| Q |
113 |
tggatagaaaaataatgctagcatatcatataatctaacacactct |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41902406 |
tggatagaaaaataatgctagcatatcatataatctaacacactct |
41902451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 634 - 716
Target Start/End: Original strand, 55095229 - 55095311
Alignment:
| Q |
634 |
ctgactctgatcacatctactatcaggtaattaacctttctctttttattattatgtaatgtctaattaatgtgtgtgttagt |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55095229 |
ctgactctgatcacatctactatcaggtaattaacctttctctttttattattatgtaatgtctaattaatgtgtgtgttagt |
55095311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 345 - 588
Target Start/End: Complemental strand, 9142952 - 9142709
Alignment:
| Q |
345 |
ataattaagctccaccagaaccaaatttctttcccaacataagcacctgcagtttatcataacttgcaagcacaccagcaccagctactgctcgaagaat |
444 |
Q |
| |
|
|||||||||| |||||||| || ||||||| || |||| ||| ||||||| || || |||| | |||||||||||||||||| || || || || || |
|
|
| T |
9142952 |
ataattaagcaccaccagatccgtatttcttgccgaacacaagaacctgcaacttgtcgtaaccagaaagcacaccagcaccagcaacagcacggaggat |
9142853 |
T |
|
| Q |
445 |
gtttgcaccagcacctttgaagagagattttggaccttcagttttcacaatttgtgagaaagcatccaaagaactcttgtactttacagcttcacctgat |
544 |
Q |
| |
|
||| |||||||| || ||||| | || || | ||| ||| | || | |||||| ||| ||||| || |||||||||||||| |||||||| || || |
|
|
| T |
9142852 |
gttagcaccagctcccttgaacaatgacttagcaccctcattcttgaggatttgttggaatgcatcaaaggaactcttgtacttgacagcttctccggag |
9142753 |
T |
|
| Q |
545 |
gtcatcatcattcttctacgaactgtgtctaaagggtaagatgc |
588 |
Q |
| |
|
||||||||||||||||| | ||| ||||| | |||||| ||||| |
|
|
| T |
9142752 |
gtcatcatcattcttctcctaacagtgtcaatagggtatgatgc |
9142709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 359 - 471
Target Start/End: Original strand, 30345258 - 30345370
Alignment:
| Q |
359 |
ccagaaccaaatttctttcccaacataagcacctgcagtttatcataacttgcaagcacaccagcaccagctactgctcgaagaatgtttgcaccagcac |
458 |
Q |
| |
|
||||||||| |||||||||| |||| | || |||||| || ||||||| ||||||||||||||||| || ||||| || | |||||||||||||||| |
|
|
| T |
30345258 |
ccagaaccatatttctttccaaacaagaccagctgcagcttgtcataaccagcaagcacaccagcacctgcaactgcacgcaatatgtttgcaccagcac |
30345357 |
T |
|
| Q |
459 |
ctttgaagagaga |
471 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
30345358 |
ctttgaaaagaga |
30345370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 518 - 588
Target Start/End: Complemental strand, 13561746 - 13561676
Alignment:
| Q |
518 |
ctcttgtactttacagcttcacctgatgtcatcatcattcttctacgaactgtgtctaaagggtaagatgc |
588 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||||||| | ||||||||| | ||||||||||| |
|
|
| T |
13561746 |
ctcttgtacttgacagcttctccagatgtcatcatcattcttctcctaactgtgtcaattgggtaagatgc |
13561676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University