View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1247_low_13 (Length: 495)
Name: NF1247_low_13
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 30 - 484
Target Start/End: Original strand, 34674346 - 34674800
Alignment:
| Q |
30 |
atttgaagtatacaaaatgctgtttgactcttttctttatcatttgtctatattgtattatggtagaaggggagccttggcgcaacaattgaagtttctg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34674346 |
atttgaagtatacaaaatgctgtttgactcttttctttatcatttgtctatattgtattatggtagaaggggagccttggcgcaacaattgaagtttctg |
34674445 |
T |
|
| Q |
130 |
ccatgtgactggacctcacaggctcgagtcgcacaactaagctctttcaaacaaaaggcaacggagatgcactgtcagtggcaaattacactgacaatgc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
34674446 |
ccatgtgactggacctcacaggctcgagtcgcacagccaagctctttcaaacaaaaggcaatggagatgcactgtcagtggcaagttacactgacaatac |
34674545 |
T |
|
| Q |
230 |
atattcccttttctgtagaatgtaatacaaacatacctgcgcaacccaatgatgatatgtattgcttatattggtcctcctccaagcttccaaatcaaaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34674546 |
atattcccttttctgtagaatgtaatacaaacatacctgcgcaacccaatgatgatatttattgcttatattggtcctcctccaagcttccaaatcaaaa |
34674645 |
T |
|
| Q |
330 |
atgttcatgccataggcccaagcacattcgttgggattgaaattttcagatattagagggtgagaaaagttcaaataacttttcaaccttttcgacatca |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34674646 |
atgttcatgccataggcccaagcacattcgttgggattgaaattttcagatattagagggtgagaaaagttcaaataacttttcaaccttttcgacatca |
34674745 |
T |
|
| Q |
430 |
caaacttgtcttctccattgcatgtttccactgctccattcacttttccattcat |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34674746 |
caaacttgtcttctccattgcatgtttccactgctccattcacttttccattcat |
34674800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 262 - 484
Target Start/End: Original strand, 55869914 - 55870136
Alignment:
| Q |
262 |
atacctgcgcaacccaatgatgatatgtattgcttatattggtcctcctccaagcttccaaatcaaaaatgttcatgccataggcccaagcacattcgtt |
361 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||| ||||||||||||| ||||||||||||| | |||| ||||||||||||||| |||||||||||||| || |
|
|
| T |
55869914 |
atacctgctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaagcacattcatt |
55870013 |
T |
|
| Q |
362 |
gggattgaaattttcagatattagagggtgagaaaagttcaaataacttttcaaccttttcgacatcacaaacttgtcttctccattgcatgtttccact |
461 |
Q |
| |
|
|||| || |||| ||||||||||||||| || ||||||||||| ||||||||| | || ||||||||| || |||| || ||||||||||| ||| |
|
|
| T |
55870014 |
tggatcaaagtttttagatattagagggtgggagaagttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctact |
55870113 |
T |
|
| Q |
462 |
gctccattcacttttccattcat |
484 |
Q |
| |
|
||||| || |||||||||||||| |
|
|
| T |
55870114 |
gctccgttgacttttccattcat |
55870136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 481
Target Start/End: Complemental strand, 31536458 - 31536355
Alignment:
| Q |
378 |
gatattagagggtgagaaaagttcaaataacttttcaaccttttcgacatcacaaacttgtcttctccattgcatgtttccactgctccattcacttttc |
477 |
Q |
| |
|
|||||||||||||| || |||| |||||| ||||||||||| || || ||||||| || ||||| || ||| ||| ||| ||| ||||||| ||||||| |
|
|
| T |
31536458 |
gatattagagggtgggagaagtacaaatagcttttcaacctctttgagatcacaagtttatcttcccctttgtatggttctactactccattgacttttc |
31536359 |
T |
|
| Q |
478 |
catt |
481 |
Q |
| |
|
|||| |
|
|
| T |
31536358 |
catt |
31536355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University