View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_15 (Length: 467)
Name: NF1247_low_15
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 11193890 - 11194224
Alignment:
| Q |
13 |
aatatatataagctttgaagatgttagtttggagaaagaaagtcgtgatgatagagtgtatcatgaaaattacttcaaatatgtgaatatgtctgaatgt |
112 |
Q |
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| T |
11193890 |
aatatatataagctttgaagatgttagtttggagaaagaaagtcgtgatgatagagtgtatcatgaaaattacttcaaatatgtgaatatgtctgaatgt |
11193989 |
T |
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| Q |
113 |
caaaatcagtatgttgtggctgttctacaccgaaaaatgattgataagggaagtatttctgttccaacaattctactcaaatggaagactttacctccta |
212 |
Q |
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| T |
11193990 |
cac-------------tggctgttctacaccgaaaaatgattgataagggaagtatttctgttccaacaattctacttaaatggaagactttacctccta |
11194076 |
T |
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| Q |
213 |
agtacggcacttggaattttgctgctaatgctgatgtgtttgtggtcataagtgatcaaccggacaagataaaagaatatgaagctaaagacataaaatg |
312 |
Q |
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| T |
11194077 |
agtacggcacttggaattttgctgctaatgctgatgtgtttgtggtcataagtgatcaaccggacaagataaaagaatatgaagctcaagacgtaaaatg |
11194176 |
T |
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| Q |
313 |
caaggaattgacatacactatacaggaaaagtctctagaagatgaagg |
360 |
Q |
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| T |
11194177 |
caaggaattgacatacactatacaggaaaagtctctagaagatgaagg |
11194224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 39798401 - 39798338
Alignment:
| Q |
265 |
tgatcaaccggacaagataaaagaatatgaagctaaagacataaaatgcaaggaattgacatac |
328 |
Q |
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| T |
39798401 |
tgatcaacgggacaagataaaagaatatgaagctcaagacataaaatgcaaggaattggcatac |
39798338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 1639354 - 1639314
Alignment:
| Q |
174 |
ttccaacaattctactcaaatggaagactttacctcctaag |
214 |
Q |
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| T |
1639354 |
ttccaacaagtctactcaaatggaagacttttcctcctaag |
1639314 |
T |
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