View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_17 (Length: 435)
Name: NF1247_low_17
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 98 - 426
Target Start/End: Complemental strand, 1884096 - 1883766
Alignment:
| Q |
98 |
atgtcaacacattcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcatttttctatgtattctaagttttatcc |
197 |
Q |
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| T |
1884096 |
atgtcaacacattcattgcctataatcacaacaggtggcagaaaatccatgtaaaaggaccgttttcttgtcatctttctatgtgttctaagttttatcc |
1883997 |
T |
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| Q |
198 |
catacacaacaatcacaaaccttgttgaagttcagaatgttgttagatgcttttgatgatgttctgagttggacaattgtttaatcaaaaaccaaaataa |
297 |
Q |
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| T |
1883996 |
tatatacaacaatcacaaaccttgttgaagttcagaatgttgttagatgcttttgatgaggttttgagttggaccat--tataatc-aaaaccaaaataa |
1883900 |
T |
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| Q |
298 |
aagttaaagctgattgtcttaaattaatatatatcaaagacttgcttactattatattgttattagtcatgttac-------tcatgatggtgttggcat |
390 |
Q |
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| T |
1883899 |
aagttaaagctcattgtcttaaattaatatatatc--acacttgcttactattatattgtttttagtcatgttactcatgagtcatgatggtgttggcat |
1883802 |
T |
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| Q |
391 |
aatatctcaaacattttgttaattagttagtattat |
426 |
Q |
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| T |
1883801 |
aatatatcaaacattttgttaattagttagtattat |
1883766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 1878074 - 1877947
Alignment:
| Q |
108 |
attcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcatttttctatgtattctaagttttatcccatacacaac |
207 |
Q |
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| T |
1878074 |
attcattgcttgcaatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaac |
1877975 |
T |
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| Q |
208 |
aatcacaaaccttgttgaagttcagaat |
235 |
Q |
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| T |
1877974 |
aatggcaaaccttgttgaaattcagaat |
1877947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 1877892 - 1877844
Alignment:
| Q |
277 |
tttaatcaaaaaccaaaataaaagtt-aaagctgattgtcttaaattaa |
324 |
Q |
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| T |
1877892 |
tttaatcaaaaaccaaaatgaaagttaaaagctggttgtcttaaattaa |
1877844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 1901993 - 1901922
Alignment:
| Q |
106 |
acattcattgcctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcatttttct |
177 |
Q |
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| T |
1901993 |
acattcattgcctataatcaccacaggtggcaaaacatccatgtaaagtgaccatcttcttgtcatgtttct |
1901922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 1890696 - 1890602
Alignment:
| Q |
142 |
atccatgtaaaaggaccattttcttgtcat-ttttctatgtattctaagttttatcccatacacaacaatcacaaaccttgttgaagttcagaat |
235 |
Q |
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| T |
1890696 |
atccttgtaaaaggaccatcttcttctcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagttcagaat |
1890602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 1895546 - 1895509
Alignment:
| Q |
142 |
atccatgtaaaaggaccattttcttgtcatttttctat |
179 |
Q |
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| T |
1895546 |
atccatgtaaaaggaccatcttcttgtcatgtttctat |
1895509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 11549184 - 11549123
Alignment:
| Q |
116 |
cctataatcaccacaattggtagacaatccatgtaaaaggaccattttcttgtcatttttct |
177 |
Q |
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| T |
11549184 |
cctataatcactacaaccggtagaaaatccatgtaaaaagaccatcttcttttcatctttct |
11549123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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