View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_23 (Length: 394)
Name: NF1247_low_23
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 155 - 341
Target Start/End: Original strand, 31929326 - 31929512
Alignment:
| Q |
155 |
agagtaggagtttgacaatcttgttatgttttgataaaggtagttaaaatcacgagttaactcgtaggatcgtatgtttaggtatcaattttgagttgac |
254 |
Q |
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| T |
31929326 |
agagttggagtttgacaatcttgttatgttttgataaaggttgttaaaatcacgagttaactcgtaggatcgtatgtttaggtatcaattttgagttgac |
31929425 |
T |
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| Q |
255 |
tcgactataaagtccaattaagttaactcgaaaatgaaaacatgtttattgggctggaatcgtagtgaatttgttaactcttaaact |
341 |
Q |
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| T |
31929426 |
tcgactataaactccaattaagttaacttgaaaatgaaaccaagcttactcggatggactcgtagtgaatttgttaactcttaaact |
31929512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 31929248 - 31929327
Alignment:
| Q |
29 |
aatttatggatcatgaaaaatatggatgtaataatacattatttttcttcataatgtagactaacattttgttcaattag |
108 |
Q |
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| T |
31929248 |
aatttatggatcatgaaaaatttggatgtaataatacattatttttcttcataatgtagactaacattttgttcaattag |
31929327 |
T |
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