View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_24 (Length: 381)
Name: NF1247_low_24
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 34920720 - 34921059
Alignment:
| Q |
11 |
cataggccaattttcattatattt-acaaattcatctagttaaggattaatattaaatgagatatgattaaacaatgtattataagtggaaacaatcttc |
109 |
Q |
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| T |
34920720 |
cataggccaattttctttatattttacaaattcatctagttaaggattaatattaaatgagatatgattaaacaatgtattataagtggaaacaatcttc |
34920819 |
T |
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| Q |
110 |
acttgacaagttaactttgtaaagttgatttaggctcgacctaaattctaatatggtatattagacctgattatagttcatgatcacgtgggtaatcgac |
209 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34920820 |
acttgataagttaactttgtaaagttgatttaggctcgacctaaattctaatatggtatatcagacctgattatagttcatgatcacgtgggtaatcgac |
34920919 |
T |
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| Q |
210 |
tcatcacatttctgttacgtctcatgctattcaattaatgctattggaccaccattcaaataactcttattggtaccatgtggtatcgtgtcctaggtgt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34920920 |
tcatcacatttctgttacgtctcatgctattcaattaatgctattag---gccattcaaataactcttattggtaccatgtggtatcgtctcctaggtgt |
34921016 |
T |
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| Q |
310 |
ggtttgttttaggggttacacattgaatgatatatgacctaat |
352 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34921017 |
ggtttgttttaggggttacacattgaatgacatatgacctaat |
34921059 |
T |
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