View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_27 (Length: 359)
Name: NF1247_low_27
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 29 - 349
Target Start/End: Complemental strand, 54793994 - 54793674
Alignment:
| Q |
29 |
aatacccaccacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaattt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793994 |
aatacccaccacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaattt |
54793895 |
T |
|
| Q |
129 |
ctcatcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacac |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793894 |
ctcatcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacac |
54793795 |
T |
|
| Q |
229 |
agagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagag |
328 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793794 |
agagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagag |
54793695 |
T |
|
| Q |
329 |
caaagctccatggccttcatc |
349 |
Q |
| |
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||||||||||||||||||||| |
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| T |
54793694 |
caaagctccatggccttcatc |
54793674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 30 - 316
Target Start/End: Original strand, 54775646 - 54775932
Alignment:
| Q |
30 |
atacccaccacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttc |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54775646 |
atacccaccacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagctttttcaatttc |
54775745 |
T |
|
| Q |
130 |
tcatcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacaca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775746 |
tcatcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacaca |
54775845 |
T |
|
| Q |
230 |
gagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcc |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54775846 |
gagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacatgctcc |
54775932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 349
Target Start/End: Complemental strand, 52286674 - 52286355
Alignment:
| Q |
30 |
atacccaccacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttc |
129 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52286674 |
atacccaccacttggattgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaacttc |
52286575 |
T |
|
| Q |
130 |
tcatcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacaca |
229 |
Q |
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|||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
52286574 |
tcatcttcctcattcatgactgactgtgtcaatataatagtattaccgtgttaattattatactatttctacattgaggcataactactgcaaaaacaca |
52286475 |
T |
|
| Q |
230 |
gagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagc |
329 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |
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| T |
52286474 |
gagcatgtctttatggtacataccacatggctatcattctctctgacgactttaaaagggtgccaagctgaattcttcacattctcctgccaaaaagagc |
52286375 |
T |
|
| Q |
330 |
aaagctccatggccttcatc |
349 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
52286374 |
aaagctccatggccttcatc |
52286355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 30 - 345
Target Start/End: Complemental strand, 801837 - 801522
Alignment:
| Q |
30 |
atacccaccacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttc |
129 |
Q |
| |
|
||||||||||||||||||||| || || |||||||| ||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||| || |||| |
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| T |
801837 |
atacccaccacttgggttgtactcgttaacttcttttaaggctgttacaacagctgaatatatctcgtctccccattccttcttcagcttttgtagtttc |
801738 |
T |
|
| Q |
130 |
tcatcttcctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacaca |
229 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| || ||||||||| ||||| || |||| ||| |||||||||| |
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| T |
801737 |
tcatcttcctcatctataactgactgtgtcaatacaacaatattaccgtgttaattattacactatttctctattgaggcttagccactccaaaaacaca |
801638 |
T |
|
| Q |
230 |
gagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagc |
329 |
Q |
| |
|
||||||| ||||| |||||||||| | | |||||||| ||||||||||||||||||||||| ||||| || |||||||| |||||||| | ||||| |
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| T |
801637 |
gagcatggctttagggtacataccacggggttatcattctgactgaccactttaaaagggtgccaagctgagttcttcacattttcctgccataaagagc |
801538 |
T |
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| Q |
330 |
aaagctccatggcctt |
345 |
Q |
| |
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||||||| | |||||| |
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| T |
801537 |
aaagctcaacggcctt |
801522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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