View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1247_low_3 (Length: 652)
Name: NF1247_low_3
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1247_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 8 - 623
Target Start/End: Complemental strand, 53618670 - 53618055
Alignment:
| Q |
8 |
ccaataatatattaaaactagagtgatgtaatgaaagaatggaaataatgaaatagtatgcataacttcttaaaagaaacataaaacagtctaggaaagc |
107 |
Q |
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| T |
53618670 |
ccaataatatattaaaactagagtgatgtaatgaaagaatggaaataatgaaatagtatgcataacttcttaaaagaaacataaaaaagtctaggaaagc |
53618571 |
T |
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| Q |
108 |
tactaaaccatagcataaagcatgcctgctgcttgaaaatgctaagcttactgctggcatatcgaggtgacaacacacatgaaactgaagaatgcttgaa |
207 |
Q |
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| T |
53618570 |
tactaaaccatagcataaagcatgcctgctgcttgaaaatgctaagcttactgctggcatatcgaggtgacaacacacatgaaactgaagaatgcttgaa |
53618471 |
T |
|
| Q |
208 |
aaactttcgagtttcttcatcgtgagtttgcattattccattctgcaacaaaattattaactagtaaggttcggaaaaggctcaacaaacaccaaatgaa |
307 |
Q |
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| T |
53618470 |
aaactttcgagtttcttcatcatgagtttgcattattccattctgcaacaaaattattaactagtaaggttcggaaaaggctcaacaaacaccaaatgaa |
53618371 |
T |
|
| Q |
308 |
acttggcagcaagccaaacagagtaaatatgcccaaacggacaaaccagtaactctgttcaagtaacttgtatgtataaaatccattaacagtaaaagtt |
407 |
Q |
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| T |
53618370 |
acttggcagcaagccaaacagagtaaatatgcccaaacggacaaaccagtaactctgttcaagtaacttgtatgtataaaatccatcaacagtaaaagtt |
53618271 |
T |
|
| Q |
408 |
aatgtaaaatgaagatgacaatagctgagtgtggactcattagagtatctccggagcaagtagattagagaacaatgtttgatgttattaagttactttt |
507 |
Q |
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| T |
53618270 |
aatgtaaaatgaagatgacaatagctgagtgtggactcattagagtatctccggagcaagtagattagagaacaatgtttgatgttattaagttactttt |
53618171 |
T |
|
| Q |
508 |
actgggccccaagttttcacatgtgatttaagaacattcacctatgtttactccaatacaaaaataatacttgcgttctaatgtaccttaaagggtccca |
607 |
Q |
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| T |
53618170 |
actgggccccaagttttcacatgtgatttaagaacattcacctatgtttactccaatacaaaaataatatttgcgttctaatgtaccttaaagggtccca |
53618071 |
T |
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| Q |
608 |
cagtttaccactattt |
623 |
Q |
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| T |
53618070 |
cagtttaccactattt |
53618055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 477 - 557
Target Start/End: Complemental strand, 14344796 - 14344716
Alignment:
| Q |
477 |
gaacaatgtttgatgttattaagttacttttactgggccccaagttttcacatgtgatttaagaacattcacctatgttta |
557 |
Q |
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|||||||| || ||||| || ||||||||||| |||||||||||||| || ||| |||||||||||||||||||| |||| |
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| T |
14344796 |
gaacaatgctttatgttcttgagttacttttagtgggccccaagtttccatgtgttatttaagaacattcacctattttta |
14344716 |
T |
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