View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1247_low_30 (Length: 341)

Name: NF1247_low_30
Description: NF1247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1247_low_30
NF1247_low_30
[»] chr2 (3 HSPs)
chr2 (1-336)||(2015257-2015592)
chr2 (238-326)||(11845093-11845181)
chr2 (238-326)||(11849822-11849910)
[»] chr3 (6 HSPs)
chr3 (8-324)||(40568151-40568467)
chr3 (24-336)||(40579225-40579537)
chr3 (8-336)||(40572752-40573080)
chr3 (8-314)||(40601707-40602013)
chr3 (11-327)||(40597542-40597858)
chr3 (37-327)||(40591086-40591376)
[»] chr4 (3 HSPs)
chr4 (245-326)||(13765720-13765800)
chr4 (217-294)||(14155044-14155120)
chr4 (238-320)||(14153489-14153568)
[»] chr1 (5 HSPs)
chr1 (217-305)||(1868401-1868489)
chr1 (244-304)||(9161976-9162036)
chr1 (244-320)||(9229754-9229830)
chr1 (244-305)||(1842819-1842880)
chr1 (256-304)||(9156064-9156112)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 2015592 - 2015257
Alignment:
Q  1 ttactactacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacg 100  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2015592 ttactactacaacaagaagtagtgaggcacggagggtcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacg 2015493  T
Q  101 aaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2015492 aaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccc 2015393  T
Q  201 taaccagattgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagtt 300  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2015392 taaccagattgagccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagtt 2015293  T
Q  301 cctttacttgtttacgaattcattccctatgatact 336  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  2015292 cctttacttgtttacgaattcattcccaatggtact 2015257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 326
Target Start/End: Original strand, 11845093 - 11845181
Alignment:
Q  238 ctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcattcc 326  Q
    ||||||||||||||| ||||||||||||| ||| | || || |||||||| ||||||||| |||| || |||||||| |||||||||||    
T  11845093 ctttcacaaatcaacaatagaaatgtggtcaagatattaggatgttgtttggagacagaaattccattgcttgtttatgaattcattcc 11845181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 326
Target Start/End: Original strand, 11849822 - 11849910
Alignment:
Q  238 ctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcattcc 326  Q
    ||||||||||||||| ||||||||||||| ||| | || || |||||||| ||||||||| |||| || |||||||| |||||||||||    
T  11849822 ctttcacaaatcaacaatagaaatgtggtcaagatattaggatgttgtttggagacagaaattccattgcttgtttatgaattcattcc 11849910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 324
Target Start/End: Original strand, 40568151 - 40568467
Alignment:
Q  8 tacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaa 107  Q
    ||||||||||  |||| ||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| || ||||| ||    
T  40568151 tacaacaacagatagttaggcatggagggtcaactgaaacagctaaagtgttcactgttgaggagctaaatgaagcaaccaataactttgatgaaggtaa 40568250  T
Q  108 gattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccag 207  Q
    ||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| || || ||||||||| |||||||||| ||||||    
T  40568251 gatcctaggccaaggtggtcagggaactgtttacaaaggagttttacaaaataaaagaattgtagcaataaaaaagtccaaagtcagtgacccaaaccag 40568350  T
Q  208 attgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttac 307  Q
    ||||| |||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  40568351 attgagccgttcatcaatgaagtggtcgttctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcccttgc 40568450  T
Q  308 ttgtttacgaattcatt 324  Q
    ||||||| |||||||||    
T  40568451 ttgtttatgaattcatt 40568467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 24 - 336
Target Start/End: Original strand, 40579225 - 40579537
Alignment:
Q  24 gaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaagattctaggccaagga 123  Q
    |||||| ||||| |||||||||| | ||||||||||||  |||||||||||||| || ||||||||||||||||| ||||||| ||| |||||||||||     
T  40579225 gaggcatggaggttcaactgaaatagctaaagtcttcaaagttgaggagctaaaagatgcaaccaacaacttcgatgaaggcacgatcctaggccaaggt 40579324  T
Q  124 ggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccagattgatccgttcatca 223  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| |||||||||||  |||||||||    
T  40579325 ggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattgagtcgttcatca 40579424  T
Q  224 atgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcat 323  Q
    |||||||| |  | ||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  40579425 atgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtttacgaatttat 40579524  T
Q  324 tccctatgatact 336  Q
    |||| ||| ||||    
T  40579525 tcccaatggtact 40579537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 8 - 336
Target Start/End: Original strand, 40572752 - 40573080
Alignment:
Q  8 tacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaa 107  Q
    ||||||||||  ||| |||||||||||| |||||||||| | ||||||||||||  |||||||||||||| ||||||||||||||||||||  |||||||    
T  40572752 tacaacaacagatagggaggcacggaggttcaactgaaatagctaaagtcttcaaagttgaggagctaaaagaagcaaccaacaacttcgatcaaggcaa 40572851  T
Q  108 gattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccag 207  Q
    ||| ||||||||||| ||||| ||||  ||||||||||||||||||||| |||| ||||||||||| || || ||||||||||| |||||||| ||||||    
T  40572852 gatcctaggccaaggtggtcaaggaattgtttacaaaggagttttacaaaataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccag 40572951  T
Q  208 attgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttac 307  Q
     ||||  ||||||||||||||||| | || ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||     
T  40572952 gttgagtcgttcatcaatgaagtggtcgtactttcccaaatcaaccatagaaatgtggtaaagatcttgggctgttgtttagagacagaagttcccttag 40573051  T
Q  308 ttgtttacgaattcattccctatgatact 336  Q
    |||| || ||||| |||||| ||| ||||    
T  40573052 ttgtgtatgaatttattcccaatggtact 40573080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 40601707 - 40602013
Alignment:
Q  8 tacaacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaa 107  Q
    ||||||||||| |||  | ||| ||||| ||| | | |||| |||||||||||||| |||||||||||||| ||||||||||||||||| | ||| |||     
T  40601707 tacaacaacaaatagcaaagcatggaggatcagccggaacacctaaagtcttcactattgaggagctaaataaagcaaccaacaacttcaatgaaagcag 40601806  T
Q  108 gattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccag 207  Q
    ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || || || ||||||| |||||||||||  ||||||    
T  40601807 gatcctaggccaaggtggtcagggaacagtttacaaaggagttttacaagataacagaattgtcgcaataaaaaagtccacaatcagtgaccaaaaccag 40601906  T
Q  208 attgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttac 307  Q
    ||||| ||||||||||||||||||||  | ||||| |||||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||| || |    
T  40601907 attgagccgttcatcaatgaagtgatcattctttctcaaatcaaccatagaaatgtggtacagcttttgggttgctgtttagaaacagaagttccattgc 40602006  T
Q  308 ttgttta 314  Q
    |||||||    
T  40602007 ttgttta 40602013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 40597542 - 40597858
Alignment:
Q  11 aacaacaactagtgaggcacggaggctcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaagat 110  Q
    |||||||| |||||| ||| ||||| ||  || |||||  |||| |||||||| |||||||| ||||||| ||||||| ||||||| | |||||||| ||    
T  40597542 aacaacaaatagtgaagcatggagggtcgtctaaaacacttaaaatcttcactattgaggagttaaatgaggcaaccagcaacttcaatgaaggcaaaat 40597641  T
Q  111 tctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccagatt 210  Q
     ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| || |||||||| |||||||||||||| |||||||||    
T  40597642 cctaggccaaggtggtcagggaacagtttacaaaggagttttagaagataaaagtattgtagcaataaagaagtcaaaaatcagtgacccaaaccagatt 40597741  T
Q  211 gatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttg 310  Q
    ||  |||||||||||||||||   |||||||| |||||||||||||| ||||||||||| ||  | |||||||||||||| ||||||||||| || ||||    
T  40597742 gagtcgttcatcaatgaagtggccgtgctttcccaaatcaaccataggaatgtggtaaaacttgtaggttgttgtttagaaacagaagttccattgcttg 40597841  T
Q  311 tttacgaattcattccc 327  Q
    |||| ||||| ||||||    
T  40597842 tttatgaatttattccc 40597858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 37 - 327
Target Start/End: Original strand, 40591086 - 40591376
Alignment:
Q  37 tcaactgaaacaactaaagtcttcactgttgaggagctaaatgaagcaaccaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacag 136  Q
    ||||| |||||| | | ||| |||||| |||||||||||||||||||||| ||||| || || ||||| |||||||||||| ||||   |||||||||||    
T  40591086 tcaaccgaaacacccagagtgttcactattgaggagctaaatgaagcaactaacaattttgatgaaggaaagattctaggcaaaggttctcagggaacag 40591185  T
Q  137 tttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccagattgatccgttcatcaatgaagtgattgt 236  Q
    |||||||||||||||||||||||||||| |||||||| || || ||||||||||||| |||||  ||||||||||| || ||||||||||||||| | ||    
T  40591186 tttacaaaggagttttacaagataaaagtattgtagcaataaaaaagtccaaaatcaatgaccaaaaccagattgagccattcatcaatgaagtggtcgt 40591285  T
Q  237 gctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcattccc 327  Q
     ||||| |||||||||||||||||||||||||   | ||||||||||||||||||||||||||||| || |||||||| ||||||||||||    
T  40591286 tctttctcaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattccc 40591376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 13765800 - 13765720
Alignment:
Q  245 aaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcattcc 326  Q
    ||||||||| || ||||||||||||  | ||| ||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  13765800 aaatcaaccgta-aaatgtggtaaattttttgagttgttgtttagagacagaagttcccttacttctttacgaatttattcc 13765720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 14155044 - 14155120
Alignment:
Q  217 ttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagaca 294  Q
    |||||||||||| || |||| ||||| |||||||| |||||||||||||||||||| || |||||||| |||||||||    
T  14155044 ttcatcaatgaaatggttgttctttcccaaatcaatcatagaaatgtggtaaagct-tttggttgttgcttagagaca 14155120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 14153568 - 14153489
Alignment:
Q  238 ctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgttt-agagacagaagttcctttacttgtttacgaatt 320  Q
    ||||| ||||||||||||| |||||||||||| || |||||||||| ||| |||||||||||||||    ||||||||||||||    
T  14153568 ctttcccaaatcaaccatataaatgtggtaaatcttttgggttgttttttaagagacagaagttcc----cttgtttacgaatt 14153489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 1868401 - 1868489
Alignment:
Q  217 ttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttccttt 305  Q
    ||||| ||||| ||| |||| || || ||||| || ||||| ||||| || || |||||||| ||||||||||||||||||||||||||    
T  1868401 ttcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttccttt 1868489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 9162036 - 9161976
Alignment:
Q  244 caaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctt 304  Q
    ||||| || ||||||||||| || || |||||||| |||||||||||||||||||||||||    
T  9162036 caaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaagttcctt 9161976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 9229830 - 9229754
Alignment:
Q  244 caaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaatt 320  Q
    ||||| || ||||||||||| || || |||||||| |||||||| |||||| ||||||||||||| ||||| |||||    
T  9229830 caaataaatcatagaaatgttgtcaaactcttgggatgttgtttggagacacaagttcctttactagtttatgaatt 9229754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 1842819 - 1842880
Alignment:
Q  244 caaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttccttt 305  Q
    ||||| || ||||| ||||| || || |||||||| ||||||||||||||||||||||||||    
T  1842819 caaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttccttt 1842880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 9156112 - 9156064
Alignment:
Q  256 agaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctt 304  Q
    |||||||| || || |||||||| |||||||||||||||||||||||||    
T  9156112 agaaatgttgtcaaactcttgggatgttgtttagagacagaagttcctt 9156064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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